Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L21
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 1.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 3.4
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 26 4.5
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 26 4.5
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.5
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 5.9
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 5.9
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 5.9
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 7.8
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 25 7.8
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 7.8
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 381 KMNGVEMRSLRRITGVRIIDKVRNRIRDHYDVMED 485
K+NG+E R+LR + + ID NR++D+ D
Sbjct: 351 KINGLEQRALRLLAETKQID--MNRMKDYLKTRRD 383
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 283 TFWLHIKLRTASTLLSIKKLQK 218
TFW H++LR ++ LS K ++
Sbjct: 1977 TFWFHVQLRNVTSKLSQKHFEE 1998
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 69 CKILPRAEFLQPGGS 25
C IL +AEF PGGS
Sbjct: 38 CNILAKAEFQNPGGS 52
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 347 RVLG-LAEET*KQDEWRRDEKSKKNNWR 427
R+LG L+EE WR D+K+ + WR
Sbjct: 389 RILGDLSEEWKDAWRWREDDKASELKWR 416
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 279 NVSKKARLAVHRGVLVP---TLMHGRECWVWQKKHESKMNGVEMRSLRRI 419
NV++ +LA+ + + T+MH C VWQK E++ + + R+
Sbjct: 457 NVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMNRV 506
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 69 CKILPRAEFLQPGGS 25
C IL +AEFL PG S
Sbjct: 67 CDILAKAEFLNPGNS 81
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.9
Identities = 17/80 (21%), Positives = 33/80 (41%)
Frame = +3
Query: 243 RVEAVRNFMCSQNVSKKARLAVHRGVLVPTLMHGRECWVWQKKHESKMNGVEMRSLRRIT 422
R + + NF+C QN+ L + R +PT H + + S ++ + R+++
Sbjct: 14 RSKQMINFLCIQNILSARTLKICRFRFLPTPSHPTHKMAQETRAISSISEAANKRARKLS 73
Query: 423 GVRIIDKVRNRIRDHYDVME 482
R V H ++E
Sbjct: 74 KRRAKKPVEEGSSGHVLLLE 93
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 429 RIIDKVRNRIRDHY---DVMEDVVTKI*KGILNWSGHVERIDERRLRK 563
R+ +K+++R D++E+VV ++ ++ +R DERR+R+
Sbjct: 500 RLSEKLKDREESEAVTEDLIEEVVNRLRDKAIHKKAEEKRADERRIRR 547
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 7.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 342 GRECWVWQKKHESKMN 389
GR CW+W+ K + N
Sbjct: 92 GRNCWIWEGKLDKSDN 107
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 371 FLLPDPALSTMHKCRDQYTPMHSQTCLFRDILAAHK 264
FLL P L+ K T MH T +F+D+ + K
Sbjct: 72 FLLNVPMLAWNAKMIMSNTHMHDSTTIFKDVSSRQK 107
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 554 SSFIYPLYMARPIKYPFLYLCHYILHH 474
S FI L RP Y Y+C I H
Sbjct: 827 SDFIKELLYRRPFSYTLSYVCEQIPDH 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,086
Number of Sequences: 5004
Number of extensions: 32820
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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