Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L21
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0698 - 5956944-5957075,5958714-5958734,5959177-5959302,595...    31   0.85 
02_02_0102 + 6790271-6790366,6790493-6790588,6791794-6791878,679...    29   3.4  
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605...    28   4.6  
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    27   8.0  
01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545...    27   8.0  

>12_01_0698 -
           5956944-5957075,5958714-5958734,5959177-5959302,
           5959448-5959730,5959970-5960244
          Length = 278

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 373 CFFCQTQHSLPCISVGTSTPRCTAKRAFLETFWLHIKLRTAST 245
           CF    + S  C S+ +S+ R  ++  FL+ FW    LR  ST
Sbjct: 172 CFAAAGRESTGCSSMPSSSQRPDSRAMFLDLFWTGNGLRMGST 214


>02_02_0102 +
           6790271-6790366,6790493-6790588,6791794-6791878,
           6792263-6792384,6792491-6792515,6792795-6792824,
           6793123-6793187,6793710-6793757,6793816-6793848
          Length = 199

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 421 VILLRLLISTPFILLSCFFCQTQHSLPC 338
           ++L R  + TPF L++ F  +T H+L C
Sbjct: 31  LLLWRTFLLTPFKLITVFLHETSHALAC 58


>03_02_0162 +
           6053144-6053365,6053474-6053548,6054477-6054623,
           6054749-6055300,6055387-6055622,6055914-6056130
          Length = 482

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 69  CKILPRAEFLQPGGS 25
           C+IL +AEFL PGGS
Sbjct: 73  CEILGKAEFLNPGGS 87


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 372 HESKMNGVEMRSLRRITGVRII-DKVRNRIRDHYDVMEDVVTKI*KGI 512
           H S MNG+E+ S  +   V  + +K++     H DV+E +   + K +
Sbjct: 121 HRSTMNGIELSSEDKAILVETLKNKLQALAEQHVDVLESLAPSVRKRV 168


>01_03_0243 +
           14154122-14154190,14154373-14154415,14154491-14154552,
           14155214-14155310,14157663-14157733,14158338-14158694
          Length = 232

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 421 VILLRLLISTPFIL--LSCFFCQTQHSLPCISVGTSTPRCTAKRAFLETFWLHIKLRTAS 248
           V +L  L   PF +   +C  C+    L CI+      RC  KR F  T WL  +L+  +
Sbjct: 160 VAILSSLEHLPFDMDMRACSHCEC---LLCIT--HEIVRCDLKREFFCTIWLAYRLQDEA 214

Query: 247 TLLSIKK 227
           + L  KK
Sbjct: 215 SCLQDKK 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,031,628
Number of Sequences: 37544
Number of extensions: 213122
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)