Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L21
         (571 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY714545-1|AAU14220.1|  278|Homo sapiens FSHD region gene 2 prot...    32   1.6  
BT006950-1|AAP35596.1|  354|Homo sapiens cyclin K protein.             31   3.8  
BC015935-1|AAH15935.1|  354|Homo sapiens cyclin K protein.             31   3.8  
AF542236-1|AAN06829.1|  354|Homo sapiens cyclin K protein.             31   3.8  
AF270832-1|AAF82290.1|  348|Homo sapiens cyclin K protein.             31   3.8  
AF060515-1|AAD09978.1|  357|Homo sapiens cyclin K protein.             31   3.8  
BC110984-1|AAI10985.1|  514|Homo sapiens KPL2 protein protein.         30   6.6  
AK058124-1|BAB71674.1|  514|Homo sapiens protein ( Homo sapiens ...    30   6.6  

>AY714545-1|AAU14220.1|  278|Homo sapiens FSHD region gene 2 protein
           protein.
          Length = 278

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
 Frame = +3

Query: 270 CSQNVSKKAR--LAVHRGVLVPTLM-----HGRECWVWQKKHESKMNGVEMRSLRR--IT 422
           CS +++KK+R   AVH   +  T       H R C    K+H S+  GV+  S+R+  +T
Sbjct: 118 CSLSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVT 177

Query: 423 GVRIIDK 443
            VR + +
Sbjct: 178 SVRAMSE 184


>BT006950-1|AAP35596.1|  354|Homo sapiens cyclin K protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 333 LMHGRECWVWQKKH----ESKMNGVE--MRSLRRITGVRIIDKVRNRIRDHYDVM 479
           L H + CW W KK      S++ G++    +  R  G R I  V  R+  HYD +
Sbjct: 17  LDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTL 71


>BC015935-1|AAH15935.1|  354|Homo sapiens cyclin K protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 333 LMHGRECWVWQKKH----ESKMNGVE--MRSLRRITGVRIIDKVRNRIRDHYDVM 479
           L H + CW W KK      S++ G++    +  R  G R I  V  R+  HYD +
Sbjct: 17  LDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTL 71


>AF542236-1|AAN06829.1|  354|Homo sapiens cyclin K protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 333 LMHGRECWVWQKKH----ESKMNGVE--MRSLRRITGVRIIDKVRNRIRDHYDVM 479
           L H + CW W KK      S++ G++    +  R  G R I  V  R+  HYD +
Sbjct: 17  LDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTL 71


>AF270832-1|AAF82290.1|  348|Homo sapiens cyclin K protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 333 LMHGRECWVWQKKH----ESKMNGVE--MRSLRRITGVRIIDKVRNRIRDHYDVM 479
           L H + CW W KK      S++ G++    +  R  G R I  V  R+  HYD +
Sbjct: 17  LDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTL 71


>AF060515-1|AAD09978.1|  357|Homo sapiens cyclin K protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 333 LMHGRECWVWQKKH----ESKMNGVE--MRSLRRITGVRIIDKVRNRIRDHYDVM 479
           L H + CW W KK      S++ G++    +  R  G R I  V  R+  HYD +
Sbjct: 17  LDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTL 71


>BC110984-1|AAI10985.1|  514|Homo sapiens KPL2 protein protein.
          Length = 514

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +3

Query: 363 QKKHESKMNGVEMRSLRRITGVRI 434
           QKK +S + GVEM++++R+T +R+
Sbjct: 105 QKKKKSGLTGVEMQTMQRLTNLRL 128


>AK058124-1|BAB71674.1|  514|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25395 fis, clone TST02553. ).
          Length = 514

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +3

Query: 363 QKKHESKMNGVEMRSLRRITGVRI 434
           QKK +S + GVEM++++R+T +R+
Sbjct: 105 QKKKKSGLTGVEMQTMQRLTNLRL 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,087,812
Number of Sequences: 237096
Number of extensions: 1235575
Number of successful extensions: 2437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)