Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L21
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    38   0.004
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    38   0.005
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    38   0.005
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    38   0.005
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    34   0.063
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +3

Query: 288  KKARLAVHRGVLVPTLMHGRECWVWQKKHESKMNGVEMRSLRRITGVRII-----DKVRN 452
            KK R  +   +++P L +G E W + K    ++        RR+ G+ +      D  R 
Sbjct: 733  KKIRANLFDSIILPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHRE 792

Query: 453  RIRDHYDVMEDVVTKI*KGILNWSGHVERIDERR 554
             IR    ++ D +  + K  L W+GHV R  + R
Sbjct: 793  DIRT-MSLVRDPLNFVKKRKLGWAGHVARRKDGR 825


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +3

Query: 288  KKARLAVHRGVLVPTLMHGRECWVWQKKHESKMNGVEMRSLRRITGVRII-----DKVRN 452
            KK R  +   +++P L +G E W + K    ++        RR+ G+ +      D  R 
Sbjct: 908  KKIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHRE 967

Query: 453  RIRDHYDVMEDVVTKI*KGILNWSGHVERIDERR 554
             IR    ++ D +  + K  L W+GHV R  + R
Sbjct: 968  DIRT-MSLVRDPLNFVKKRKLGWAGHVARRKDGR 1000


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +3

Query: 288 KKARLAVHRGVLVPTLMHGRECWVWQKKHESKMNGVEMRSLRRITGVRII-----DKVRN 452
           KK R  +   +++P L +G E W + K    ++        RR+ G+ +      D  R 
Sbjct: 647 KKIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHRE 706

Query: 453 RIRDHYDVMEDVVTKI*KGILNWSGHVERIDERR 554
            IR    ++ D +  + K  L W+GHV R  + R
Sbjct: 707 DIRT-MSLVRDPLNFVKKRKLGWAGHVARRKDGR 739


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +3

Query: 288 KKARLAVHRGVLVPTLMHGRECWVWQKKHESKMNGVEMRSLRRITGVRII-----DKVRN 452
           KK R  +   +++P L +G E W + K    ++        RR+ G+ +      D  R 
Sbjct: 259 KKIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHRE 318

Query: 453 RIRDHYDVMEDVVTKI*KGILNWSGHVERIDERR 554
            IR    ++ D +  + K  L W+GHV R  + R
Sbjct: 319 DIR-KMSLVRDPLNFVKKRKLGWAGHVARRKDGR 351


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +3

Query: 291 KARLAVHRGVLVPTLMHGRECWVWQKKHESKMNGVEMRSLRRITGVRIID-KVRNRIRDH 467
           + R  +    ++P L +G E W + K+   ++        R++ G+ + + + RN  R+ 
Sbjct: 45  RLRANLFDSTVLPALTYGSEAWTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREE 104

Query: 468 Y---DVMEDVVTKI*KGILNWSGHVERIDERR 554
                 + D +  I K  L W+GHV R  + R
Sbjct: 105 VREKSKLRDPLIHIKKRKLGWAGHVARRTDGR 136


>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
            protein M116.5 protein.
          Length = 1064

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +3

Query: 222  CNFFIERRVEAVRNFMCSQNVSKKARLAVHRGVLVPTLMHGRECWVWQKKHESKMNGVEM 401
            C FF + R+  ++NFM +QN  KK  L          L  GR+ + +   H  +M    +
Sbjct: 827  CFFFSKIRI--IKNFMTAQNFKKKILLKSQSLSSFSCLSMGRKLFFFGDTHIKRM----V 880

Query: 402  RSLRRITGVRI 434
            R LR    VR+
Sbjct: 881  RILRSTVMVRV 891


>Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -3

Query: 551 SFIYPL--YMARPIKYPF--LYLCHYILHHIIMVPY 456
           SF  P+  +M+ PI  PF  L  C YI+H++++  Y
Sbjct: 591 SFSGPIDAFMSHPIWQPFGRLSYCAYIVHYVVLYMY 626


>Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -3

Query: 551 SFIYPL--YMARPIKYPF--LYLCHYILHHIIMVPY 456
           SF  P+  +M+ PI  PF  L  C YI+H++++  Y
Sbjct: 591 SFSGPIDAFMSHPIWQPFGRLSYCAYIVHYVVLYMY 626


>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 226 IFLSREELRPCVTLCAARMSLKRHVWL---CIGVYWSLHL 336
           + +SRE  R    L  + M+L   VWL   C   YWS+HL
Sbjct: 405 LLISRENFRLLRQLLHSTMTLP--VWLREPCTPYYWSMHL 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,534
Number of Sequences: 27780
Number of extensions: 186880
Number of successful extensions: 618
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)