Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L20
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.0  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   5.3  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   5.3  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    26   5.3  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.3  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    25   7.1  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   7.1  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.3  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.3  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 288 SVPEHSTARHVLAPALTSSTDITRTLGINLVCREYL--FLYRYHINSLYFIEMMHS 449
           S P++S  R ++  AL + + I   L + L  R  L   L  YH++ LYF E++ S
Sbjct: 608 STPDNSL-RTLIVLALMALSSIILPLILQLHLRRVLGLSLKLYHLSILYFFELISS 662


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 543 LFAKVSFNLLYIWFVYIKRPRARAPLRHTT 632
           L  K+   LLY W++Y + P A +  R  T
Sbjct: 44  LAVKLLIYLLYCWYIYSEVPSASSKFRSFT 73


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 543 LFAKVSFNLLYIWFVYIKRPRARAPLRHTT 632
           L  K+   LLY W++Y + P A +  R  T
Sbjct: 44  LAVKLLIYLLYCWYIYSEVPSASSKFRSFT 73


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 306 TARHVLAPALTSSTDITRTLGINLVCREYLFLYRYHINSLYFIEMM 443
           TA+    P++ + +  T  L   L   ++LF Y  H+N L  I  M
Sbjct: 190 TAKIYALPSILTLSACTAPLSEALTIWDFLFAYGIHLNILCVIAQM 235


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 543 LFAKVSFNLLYIWFVYIKRPRARAPLRHTT 632
           L  K+   LLY W++Y + P A +  R  T
Sbjct: 44  LAVKLLIYLLYCWYIYSEVPSASSKFRSFT 73


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 318 VLAPALTSSTDITRTLGINLVCREYLFLYRYHINSLYFIEMMH 446
           +L+  + S  D+T +L I + CR  L  +   IN++   + ++
Sbjct: 184 LLSELIVSMDDLTESLKIQVSCRNKLVQWLIKINNMNITDQLN 226


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 515 LENDQADPVVTSITHTVASTTFTMHHLDKI 426
           LEND A P+  S T+T   T  T+    K+
Sbjct: 29  LENDVAPPIHISTTYTYPGTPDTLQPFTKL 58


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 511 KTIRPTPSSLRLHTLSPRQHSLCIISIKYKLFI*YRYKNKYSLQTKLIPKVRVMS--VEL 338
           KTI P  +S +  T S + HS  +I +     +     +  +  T  IP   + S  VE+
Sbjct: 60  KTIYPESTSTKSITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGTVEI 119

Query: 337 VRAGASTCRAVLCSGT 290
           V   A T    + SGT
Sbjct: 120 VEPTAGTVTETITSGT 135


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 511 KTIRPTPSSLRLHTLSPRQHSLCIISIKYKLFI*YRYKNKYSLQTKLIPKVRVMS--VEL 338
           KTI P  +S +  T S + HS  +I +     +     +  +  T  IP   + S  VE+
Sbjct: 60  KTIYPESTSTKSITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGTVEI 119

Query: 337 VRAGASTCRAVLCSGT 290
           V   A T    + SGT
Sbjct: 120 VEPTAGTVTETITSGT 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,083
Number of Sequences: 5004
Number of extensions: 36108
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)