Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L19
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.3  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.9  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.9  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    25   9.1  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -2

Query: 550 VARLLFIKKKKGIDFFVLVQSKYKTKRLYYRQFNVINKNFRIIATRVST 404
           +A    I+K   IDF   +++KY+ +  +  Q   ++    I+ T  +T
Sbjct: 251 IASYAMIEKDSSIDFIEFIRNKYQYRNFFMAQVKTLSFLAYILRTHPNT 299


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 30  EIQALLTADFEIGHYIRERVVSRAV 104
           E+  LL  D++IG   +E+++ RAV
Sbjct: 307 ELDELLELDYQIGEDFKEKLIPRAV 331


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 297  INSLTTTGVCIPPGSQARPCPVSSRVSSGL 208
            +NS T+T V  P   Q +P   +S VSS +
Sbjct: 1263 VNSATSTPVAAPTAQQIQPGKQASAVSSNV 1292


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 392 KKPIGRNPCSDNSKVLINNIKL 457
           K P    PC+DN K+  ++IKL
Sbjct: 311 KNPSKTPPCNDNFKIFSDDIKL 332


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 523 KKGIDFFVLVQSKYKTKRLYYRQFNVINKNFR 428
           +KG+   +L   +   K +  R F+++NKN R
Sbjct: 226 QKGVSDIILAGLESHLKNILSRCFSILNKNIR 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,469
Number of Sequences: 5004
Number of extensions: 32149
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)