Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L19
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     29   4.1  
12_02_0665 + 21670956-21671834,21672563-21672583                       28   7.1  

>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 297 INSLTTTGVCIPPGSQARPCPVSSRVSS 214
           +NS  T  V IP  S A  CP S +V S
Sbjct: 200 VNSARTATVAIPVASNAMSCPKSEKVKS 227


>12_02_0665 + 21670956-21671834,21672563-21672583
          Length = 299

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 255 SQARPCPVSSRVSSGLVPRHRFP 187
           S A P P +SRVSS    RHR P
Sbjct: 32  SPASPLPFASRVSSAAPLRHRLP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,666,896
Number of Sequences: 37544
Number of extensions: 183916
Number of successful extensions: 448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)