Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L19
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical
           protein F56F3.4 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 285 TTTGVCIPPGSQARPCPVSSRVSSGLVP 202
           T + V  PPG  + P  VSS VSSG  P
Sbjct: 192 TFSPVATPPGELSSPSTVSSHVSSGSEP 219


>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 125 ALACVEQYGARYDAFANIVSNLKVGSQQGLNFRGDSRVRPR 3
           A++ VEQYG  Y   A +V+ L VG+   L   G +   P+
Sbjct: 123 AISEVEQYGKWYMLVARVVTGLGVGNLAALRAYGATASTPK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,431
Number of Sequences: 27780
Number of extensions: 179379
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)