Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L18
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.46 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   1.4  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.6  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    24   7.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   7.4  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    24   9.8  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    24   9.8  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 274 TIKLSTAVTNLVLQKVTQSFFVRKKTLLRALSLIHSLFSCNIMRTV 137
           ++ LST +    L KVT +F V    L+    L+HS  S    RT+
Sbjct: 104 SLPLSTLLQKFPLSKVTSAFIVAWGILMTLTCLVHSYASYIATRTL 149


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 54   QSGLRSLDLFTSFSQRCYSALVEPIVSSTVRIILQLNNE 170
            + G R  ++  SF +    A V+PI  S VR+ L +N++
Sbjct: 1207 KEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQ 1245


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 201 FLRTKKLCVTFCKTKF 248
           +LR  KLCV+F ++KF
Sbjct: 8   YLRFNKLCVSFFRSKF 23


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 216 KLCVTFCKTKFVTAVDSFIVRFFYYICK 299
           K  V  C T  +TA+ SFI+   Y I K
Sbjct: 257 KTHVVVCSTDDLTAISSFILSSIYKIRK 284


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = -2

Query: 205 KKTLLRALSLIHSLFSCNIMRTVDDTIGS 119
           ++++L  L+++HS+F   +   +D+ + S
Sbjct: 345 EESILHLLNILHSIFEYTVPEAIDNIVQS 373


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 1   ARGAERTCSCSNATCIPDRA-VCEVSICLHRSVSDAIV 111
           ARGA+R  S  +   + D   VC   I + R VSD ++
Sbjct: 298 ARGADRMSSFGDFIALSDTVDVCTARI-ISREVSDGVI 334


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 353 LHFIKVSHHNTHSTALQVFTYI-IKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVL 177
           ++ IK ++++ H    +   Y  +   HD TV+    LSL   Y   +   KN     V+
Sbjct: 38  INLIKEAYNHVHKLIQKDERYTAVFFAHDSTVFSYLGLSLKAYYGMDYYLHKNVKAVYVI 97

Query: 176 NS 171
           ++
Sbjct: 98  HT 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,560
Number of Sequences: 5004
Number of extensions: 25685
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)