Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L18
(395 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X04385-1|CAA27972.1| 2813|Homo sapiens protein ( Human mRNA for ... 29 5.6
M25865-1|AAB59458.1| 2813|Homo sapiens von Willebrand factor pro... 29 5.6
M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein. 29 5.6
S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprot... 28 9.7
L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprot... 28 9.7
L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprot... 28 9.7
D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprot... 28 9.7
D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprot... 28 9.7
D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprot... 28 9.7
DQ067198-1|AAY46157.1| 873|Homo sapiens very low density lipopr... 28 9.7
BC142653-1|AAI42654.1| 845|Homo sapiens very low density lipopr... 28 9.7
AL450467-4|CAH72453.1| 752|Homo sapiens very low density lipopr... 28 9.7
AL450467-3|CAH72455.1| 845|Homo sapiens very low density lipopr... 28 9.7
AL450467-2|CAH72454.1| 873|Homo sapiens very low density lipopr... 28 9.7
AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens ... 28 9.7
AB208822-1|BAD92059.1| 555|Homo sapiens Very low-density lipopr... 28 9.7
>X04385-1|CAA27972.1| 2813|Homo sapiens protein ( Human mRNA for
pre-pro-von Willebrand factor. ).
Length = 2813
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 ARGAERTCSCSNATCIPDRAVCEVSICLHRS 93
A A C C+ TC+PD+ +C+HRS
Sbjct: 2411 ASTATNDCGCTTTTCLPDK------VCVHRS 2435
>M25865-1|AAB59458.1| 2813|Homo sapiens von Willebrand factor protein.
Length = 2813
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 ARGAERTCSCSNATCIPDRAVCEVSICLHRS 93
A A C C+ TC+PD+ +C+HRS
Sbjct: 2411 ASTATNDCGCTTTTCLPDK------VCVHRS 2435
>M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein.
Length = 2074
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 ARGAERTCSCSNATCIPDRAVCEVSICLHRS 93
A A C C+ TC+PD+ +C+HRS
Sbjct: 1672 ASTATNDCGCTTTTCLPDK------VCVHRS 1696
>S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprotein
receptor protein.
Length = 845
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>DQ067198-1|AAY46157.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>BC142653-1|AAI42654.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>AL450467-4|CAH72453.1| 752|Homo sapiens very low density
lipoprotein receptor protein.
Length = 752
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 151 NCPSRTCRPDQFECEDGSCIHGS 173
>AL450467-3|CAH72455.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>AL450467-2|CAH72454.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 272 NCPSRTCRPDQFECEDGSCIHGS 294
>AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens
cDNA FLJ35062 fis, clone OCBBF2019195, highly similar to
VERY LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR. ).
Length = 752
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 151 NCPSRTCRPDQFECEDGSCIHGS 173
>AB208822-1|BAD92059.1| 555|Homo sapiens Very low-density
lipoprotein receptor precursor variant protein.
Length = 555
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 SCSNATCIPDRAVCEVSICLHRS 93
+C + TC PD+ CE C+H S
Sbjct: 329 NCPSRTCRPDQFECEDGSCIHGS 351
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,346,949
Number of Sequences: 237096
Number of extensions: 796661
Number of successful extensions: 1829
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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