Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L18
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    27   4.9  
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    27   4.9  
AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 75  DLFTSFSQRCYSALVEPIVSSTVRIILQLNNE*IKDNARRSVFLRTKKLCV 227
           D    F  RCY +L++PI+ +     ++ ++  I +  R+SV LR    CV
Sbjct: 405 DFLQLFYNRCYESLLKPILENVSGGNIKKDDYMIAN--RQSVILRLLTFCV 453


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform a protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 75  DLFTSFSQRCYSALVEPIVSSTVRIILQLNNE*IKDNARRSVFLRTKKLCV 227
           D    F  RCY +L++PI+ +     ++ ++  I +  R+SV LR    CV
Sbjct: 641 DFLQLFYNRCYESLLKPILENVSGGNIKKDDYMIAN--RQSVILRLLTFCV 689


>AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical
           protein C41D11.3 protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 22  CSCSNATCIPDRAVCEV 72
           CSC N  C+P+   C +
Sbjct: 300 CSCENGVCLPETCQCAI 316


>Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.2 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 347 FIKVSHHNTHSTALQVFTYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNSL 168
           FI VS H   ST + +   I++KP+ + + GG++  L +   K  R    A  S ++NS 
Sbjct: 276 FITVSSHGFISTIVML---IVQKPYREFILGGFEKFLRR---KMPRDLDLARASNLVNSR 329

Query: 167 VI 162
           V+
Sbjct: 330 VM 331


>Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.1 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 347 FIKVSHHNTHSTALQVFTYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNSL 168
           FI VS H   ST + +   I++KP+ + + GG++  L +   K  R    A  S ++NS 
Sbjct: 276 FITVSSHGFISTIVML---IVQKPYREFILGGFEKFLRR---KMPRDLDLARASNLVNSR 329

Query: 167 VI 162
           V+
Sbjct: 330 VM 331


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 344 IKVSHHNTHSTALQVFTYI-IKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSI 183
           I+   H  ++  + +  +I   KP  K      KL LTKS+T+ F +QK  + SI
Sbjct: 86  IRALGHKIYNYGITILIFIGWYKPPKKPAKSVKKLFLTKSFTRTF-SQKFVNVSI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,125,471
Number of Sequences: 27780
Number of extensions: 150495
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)