Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L18
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.24 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   2.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.8  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 82  NRSRLRKPLCREYRSRYYNCTCVQRL 5
           N +  +K  C  YR  YYN   ++++
Sbjct: 92  NNNNYKKLYCNNYRKLYYNINYIEQI 117


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 381 NFSVS*KFYITLHKSFTSQYTLNSTTSL 298
           +FS++  FY T +++   QY  N T  L
Sbjct: 368 DFSLNEDFYPTFNQTNVDQYLYNQTGPL 395


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 393 YSENNFSVS*KFYITLHKSFTSQYTLNSTTSLYIYNKKTAR*NCLRRLQT*SYKKLHKVF 214
           YS++N S S    +   ++   + T+N   S Y+ N++ +  N   +  T S  + +K+F
Sbjct: 144 YSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMF 203


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 350 HFIKVSHHNTHSTALQ 303
           H ++  HH+  STA+Q
Sbjct: 142 HHLQNHHHHLQSTAVQ 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,681
Number of Sequences: 438
Number of extensions: 1824
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)