Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L17
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    28   0.70 
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   1.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   2.8  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    26   3.7  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   6.5  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 257 ELSAARQRDQHSADELRKLTRQLRELKEENSTLN 358
           ELS A  R   + + +R+L  +  ELK  N+ LN
Sbjct: 312 ELSLAASRSSENENTIRRLALENHELKNSNNQLN 345


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 242 EQLAAELSAARQRDQHSADELRKLTRQLRELKEENSTLNAK 364
           ++L  +++   ++ +  +DE  KL + LREL EE   + A+
Sbjct: 193 DELMKQINEKEEKIEEISDETDKLQKLLRELDEEKEKVYAE 233


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +2

Query: 209 EGQLSRVRDAHEQLAAELSAARQRDQHSADELRKLTRQLRELKEENST 352
           E ++ ++++  ++L+ EL  A+       DE+  L RQ+ E KE +S+
Sbjct: 284 EYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEE-KENSSS 330


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 224 RVRDAHEQLAAELSAARQRDQHSADE-LRKLTRQLRELKEENS 349
           R R+ +++LA  + +   R +    E + KL   +REL+EEN+
Sbjct: 101 RKREQYDELAKPIMSKGLRSRTEQQESIGKLQDAIRELEEENA 143


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 227 VRDAHEQLAAELSAARQRDQHSADELRKLTRQLRELKEENSTLNAK 364
           +R   E+   E SA +Q +       RKL  + ++  +E  T+N K
Sbjct: 528 LRSLEEESIKESSATQQNENQHKRSSRKLLYEDKQAIQEAHTINTK 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,168
Number of Sequences: 5004
Number of extensions: 4671
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)