Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L16
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 258 3e-70
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 258 3e-70
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 258 3e-70
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 70 2e-13
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 59 3e-10
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 33 0.031
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.0
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 2.0
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 2.7
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 3.5
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 4.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.2
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 8.2
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 258 bits (632), Expect = 3e-70
Identities = 116/154 (75%), Positives = 135/154 (87%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGIGQ 471
+FAE+ EK+DRR+GK E++PK +KSGDA I +
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAK 401
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 258 bits (632), Expect = 3e-70
Identities = 116/154 (75%), Positives = 135/154 (87%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGIGQ 471
+FAE+ EK+DRR+GK E++PK +KSGDA I +
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAK 401
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 258 bits (632), Expect = 3e-70
Identities = 116/154 (75%), Positives = 135/154 (87%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVG
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367
Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGIGQ 471
+FAE+ EK+DRR+GK E++PK +KSGDA I +
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAK 401
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 70.1 bits (164), Expect = 2e-13
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Frame = +1
Query: 25 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVK 201
K +GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD V V+
Sbjct: 476 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 535
Query: 202 NVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAWQFA 381
+++ GYV +KN P F AQ+ +L P ++ GY+ V+ HTA FA
Sbjct: 536 GDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFA 593
Query: 382 EIKEKVDRRTGKS 420
++ K+D+ KS
Sbjct: 594 KLLHKLDKTNRKS 606
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 59.3 bits (137), Expect = 3e-10
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVV--VFAPANITTEVKSVEMHHEALQEAVPGDN 183
++DV+ I G GTV GRVE G LK G + V +++ T V +EM + L AV GDN
Sbjct: 257 IEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDN 316
Query: 184 VGFNVKNVSVKELRRGYV 237
G ++++ ++L+RG +
Sbjct: 317 CGLLLRSIKREQLKRGMI 334
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 32.7 bits (71), Expect = 0.031
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = -3
Query: 221 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 42
N+ + + T+ + + ASC S + + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 41 PIPPILYTSCRP 6
+P +C P
Sbjct: 115 YVPYTSSVACFP 126
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLAIC-RNQRESRP 404
+GS ++S + +S + I CIG+ SPH ++C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 464 MPASPDLMDLGLSSVDLPVRRSTFS 390
+ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 143 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 274
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 140 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 24
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 377 LPKSKRKSTVVLVNQQRTTLNPLNLVMPALVN 472
+P K +L ++R ++PLNL+ P L+N
Sbjct: 361 MPTEFPKPENLLPVEKRAAMSPLNLLEPRLIN 392
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.6 bits (51), Expect = 8.2
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +2
Query: 173 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 352
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 353 TQPT*PGN 376
P+ P N
Sbjct: 439 ITPS-PSN 445
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 8.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 72 YPKAWYCCRFCPC*HH 119
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,169
Number of Sequences: 5004
Number of extensions: 46481
Number of successful extensions: 105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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