Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L16
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 260 3e-70
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 260 3e-70
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 260 3e-70
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 64 5e-11
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 55 3e-08
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 54 7e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 49 2e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 49 2e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 49 2e-06
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 38 0.003
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.005
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.005
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.34
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.34
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.45
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 31 0.45
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.60
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.60
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 0.79
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 0.79
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 1.0
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.0
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 1.4
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 1.8
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 7.4
Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical p... 27 7.4
Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 27 7.4
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 7.4
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 7.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 7.4
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 27 7.4
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 27 7.4
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 27 7.4
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 7.4
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 27 9.8
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 27 9.8
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 27 9.8
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 27 9.8
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 27 9.8
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 27 9.8
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 27 9.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 260 bits (638), Expect = 3e-70
Identities = 121/152 (79%), Positives = 133/152 (87%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 216 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 275
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 276 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 335
Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGI 465
+F E+KEKVDRRTGK ED PK +KSGDAGI
Sbjct: 336 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 367
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 260 bits (638), Expect = 3e-70
Identities = 121/152 (79%), Positives = 133/152 (87%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 309
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGI 465
+F E+KEKVDRRTGK ED PK +KSGDAGI
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 260 bits (638), Expect = 3e-70
Identities = 121/152 (79%), Positives = 133/152 (87%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
LQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 309
Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
FNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGI 465
+F E+KEKVDRRTGK ED PK +KSGDAGI
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 64.1 bits (149), Expect = 5e-11
Identities = 36/131 (27%), Positives = 65/131 (49%)
Frame = +1
Query: 25 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 204
K +GTV +G++E+G ++ G +V P +V + + V GDN+ F +K
Sbjct: 347 KYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKG 406
Query: 205 VSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAWQFAE 384
+ EL+ G++ + G F A+V+VL H I++GY+ VL +A
Sbjct: 407 IEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKG 465
Query: 385 IKEKVDRRTGK 417
+ +D++TG+
Sbjct: 466 VIATIDKKTGE 476
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 54.8 bits (126), Expect = 3e-08
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 177
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 178 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 345
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 437 QSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 491
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 53.6 bits (123), Expect = 7e-08
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 177
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 178 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 345
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 438 QSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 13 QDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAVPG 177
+ VY I G GTV G++E GILK G + + T VKSV E + + +A PG
Sbjct: 257 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 316
Query: 178 DNVGFNVKNVSVKELRRGYV 237
D +G ++ + K++RRG V
Sbjct: 317 DQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 13 QDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAVPG 177
+ VY I G GTV G++E GILK G + + T VKSV E + + +A PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 178 DNVGFNVKNVSVKELRRGYV 237
D +G ++ + K++RRG V
Sbjct: 318 DQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 13 QDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAVPG 177
+ VY I G GTV G++E GILK G + + T VKSV E + + +A PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 178 DNVGFNVKNVSVKELRRGYV 237
D +G ++ + K++RRG V
Sbjct: 318 DQLGVLLRGLGPKDVRRGCV 337
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 38.3 bits (85), Expect = 0.003
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPG 177
++++Y + +G V G + G L G V+ P T V S+ +A+ PG
Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466
Query: 178 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 309
+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 28 IGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 201
I G GTV VG +E G+LK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 202 NVSVKELRRGYVAG 243
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 28 IGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 201
I G GTV VG +E G+LK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 202 NVSVKELRRGYVAG 243
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 22 YKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 198
+ I G GTV G V G+L+ T + F N VK++E + + + G F V
Sbjct: 210 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 22 YKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 198
+ I G GTV G V G+L+ T + F N VK++E + + + G F V
Sbjct: 169 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.45
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -3
Query: 302 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 126
ST T A+ + P ++ P + T +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 125 SVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 21
V + +TVP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 31.1 bits (67), Expect = 0.45
Identities = 43/149 (28%), Positives = 55/149 (36%), Gaps = 6/149 (4%)
Frame = -3
Query: 461 PASPDLMDLGLSSV---DLPVRRSTFSLISANCQAMWAVWQSNTGVYPFDI*PG*FSTMT 291
PA+P G SS P S F A A A ++TG F G ST T
Sbjct: 398 PAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGL-F----GASSTTT 452
Query: 290 CAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDLTSVV 117
A S AP GGLF + T P + T T +P T +T +
Sbjct: 453 PA--STAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATA 510
Query: 116 MLAGAKTTTVPGF-RIPVSTLPTGTVPIP 33
G +TV +P +T T T+P P
Sbjct: 511 ATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 30.3 bits (65), Expect = 0.79
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -3
Query: 293 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 114
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 113 LAGAKTTTVPGFRIPVSTLPT 51
+ T+T+P P PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 27.5 bits (58), Expect = 5.6
Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Frame = -3
Query: 311 G*FSTMTCAVKSAAPLGGLFFESPAT---*PRRNSL------TDTFLTLKPTLSPGTASC 159
G F + T A AAP GLF S T P SL T T + P S G
Sbjct: 387 GLFGSSTPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFG 446
Query: 158 RASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTL 57
+S L GA TTT P P L
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGL 480
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 173 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 24
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 146 CISTDL-TSVVMLAGAKTTTVPGFRIPVSTLPTGTVP--IPPILYT 18
CIS TS + T+P ++P+ TLP T P +PP+ T
Sbjct: 332 CISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQIT 377
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 173 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 24
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 146 CISTDL-TSVVMLAGAKTTTVPGFRIPVSTLPTGTVP--IPPILYT 18
CIS TS + T+P ++P+ TLP T P +PP+ T
Sbjct: 429 CISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQIT 474
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 30.3 bits (65), Expect = 0.79
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 345 GLPHSPHSLAICRNQRESRPSYW*INR 425
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 0.79
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 245 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 87
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 86 PGFRIP 69
PG+ P
Sbjct: 164 PGYLPP 169
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 245 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 87
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 86 PGFRIP 69
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 245 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 87
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 86 PGFRIP 69
PG+ P
Sbjct: 164 PGYLPP 169
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 245 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 87
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 86 PGFRIP 69
PG+ P
Sbjct: 164 PGYLPP 169
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 79 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 204
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 161 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 39
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 75 PKAWYCCRFCP 107
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 197 TLKPTLSPGTASCRASWCISTDLT-SVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILY 21
TL+ T P T + A+ I+T T S TTT R +T P TVP +
Sbjct: 183 TLRTTTKPPTTTTIATTRITTKTTTSPPPFTTTVTTTTSAARTIATTTPIKTVPPVKVFG 242
Query: 20 TSCRP 6
+ +P
Sbjct: 243 KAIKP 247
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 250 KNNPPRGAAD-FTAQVIVLNHP 312
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 250 KNNPPRGAAD-FTAQVIVLNHP 312
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical
protein F54B11.11 protein.
Length = 598
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 197 TLKPTLSPGTASCRASWCISTDLTSV---VMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 27
T +P LS T+S + +T +T+ ++ A TTT P P +T T PP+
Sbjct: 471 TTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTPPVTSAPATTFITPVPFTPPV 530
>Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical
protein F45E6.2 protein.
Length = 589
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 100 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK--NNPPRGA 273
F P E+ S+ + QE+ + GF+ +N + R G GDS ++PP
Sbjct: 21 FPPQFDQLELDSLLYGTDESQESTSSSSFGFSDQNAGFRS-RDGGSLGDSSSDSSPPLSC 79
Query: 274 ADFT 285
A+FT
Sbjct: 80 ANFT 83
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 161 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILY 21
CR + +S++ +S+ L + + P TGT PIP +++
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVF 259
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 245 SPAT*PRRNSLTDTFLTLKPTLSPGTASCR-ASWCISTDLTSVVMLAGAKTTTVPGFRIP 69
+P+T S + TF + T + T++ + +S I++ +S + TTT P
Sbjct: 313 TPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITST 372
Query: 68 VSTLPTGTV 42
+S+LP +
Sbjct: 373 LSSLPDNAI 381
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 245 SPAT*PRRNSLTDTFLTLKPTLSPGTASCR-ASWCISTDLTSVVMLAGAKTTTVPGFRIP 69
+P+T S + TF + T + T++ + +S I++ +S + TTT P
Sbjct: 313 TPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPEITST 372
Query: 68 VSTLPTGTV 42
+S+LP +
Sbjct: 373 LSSLPDNAI 381
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 260 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 349
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 230 PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPT 51
P +++T + +T PT++P T++ S T A TTT P T T
Sbjct: 523 PHLSTITGSIVTSTPTMAPQTSA-------SPTTTPTHTTASQPTTTKPVVTTNSVTPST 575
Query: 50 GTVPIP 33
GT +P
Sbjct: 576 GTTTVP 581
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 133 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 252
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 133 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 252
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 212 TDTFLTLKPTLSPGTASCRASWCISTD 132
T FLTL+ T T C+ SWC D
Sbjct: 42 TSLFLTLQSTGPEMTNLCKKSWCDKVD 68
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 161 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILY 21
CR + +S++ +S+ L + + P TGT PIP +++
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVF 259
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 379 AEIKEKVDRRTGKSTEDNPKS 441
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 262 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAW 372
P G A+ ++ V++ PG N P + HT + W
Sbjct: 3991 PYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNW 4027
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 262 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAW 372
P G A+ ++ V++ PG N P + HT + W
Sbjct: 4520 PYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNW 4556
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 262 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAW 372
P G A+ ++ V++ PG N P + HT + W
Sbjct: 4201 PYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNW 4237
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 262 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAW 372
P G A+ ++ V++ PG N P + HT + W
Sbjct: 3991 PYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNW 4027
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 262 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAW 372
P G A+ ++ V++ PG N P + HT + W
Sbjct: 4520 PYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNW 4556
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 262 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAW 372
P G A+ ++ V++ PG N P + HT + W
Sbjct: 4201 PYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNW 4237
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 262 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAW 372
P G A+ ++ V++ PG N P + HT + W
Sbjct: 3410 PYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNW 3446
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 160 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRG 270
+EA+P N + ++V RR +VAGD ++N G
Sbjct: 983 KEALPQGNQERDCRSVLQNRQRRCFVAGDERSNEQPG 1019
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQI 321
RR Y D P+GA DF AQ++ PG I
Sbjct: 64 RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGYI 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,702,396
Number of Sequences: 27780
Number of extensions: 285389
Number of successful extensions: 672
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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