Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L16
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   296   7e-83
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   293   9e-82
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   221   3e-60
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   164   5e-43
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.76 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  296 bits (727), Expect = 7e-83
 Identities = 138/152 (90%), Positives = 145/152 (95%)
 Frame = +1

Query: 10  LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
           LQDVYKIGGIGTVPVGRVETG+LKPG VV FAPA +TTEVKSVEMHHEALQEAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVG 309

Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
           FNVKNVSVKELRRGYVAGDSKNNPP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369

Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGI 465
            +FA+IKEK DRR GK+TE+NPKSIKSGDA I
Sbjct: 370 CKFADIKEKCDRRNGKTTEENPKSIKSGDAAI 401


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  293 bits (718), Expect = 9e-82
 Identities = 137/152 (90%), Positives = 144/152 (94%)
 Frame = +1

Query: 10  LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
           LQDVYKIGGIGTVPVGRVETGILKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVG 309

Query: 190 FNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
           FNVKN+SVKELRRGYVAGDSKN PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369

Query: 370 WQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGI 465
            +FAEIKEK DRRTGK+TE+NPKSIKSGDA I
Sbjct: 370 CKFAEIKEKCDRRTGKTTEENPKSIKSGDAAI 401



 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 182 LSPGTASCRASWCISTDLTSVVMLAGAKTTTVPG 81
           L PG     A   ++T++ SV M   A T  +PG
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPG 305


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  221 bits (540), Expect = 3e-60
 Identities = 102/112 (91%), Positives = 107/112 (95%)
 Frame = +1

Query: 130 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 309
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PPRGAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 310 PGQISNGYTPVLDCHTAHIAWQFAEIKEKVDRRTGKSTEDNPKSIKSGDAGI 465
           PGQISNGYTPVLDCHTAHIA +FAEIKEK DRRTGK+TE+NPKSIKSGDA I
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAI 112


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  164 bits (398), Expect = 5e-43
 Identities = 77/82 (93%), Positives = 79/82 (96%)
 Frame = +1

Query: 10  LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 189
           LQDVYKIGGIGTVPVGRVETG+LKPG VV FAPA +TTEVKSVEMHHEALQEAVPGDNVG
Sbjct: 193 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVG 252

Query: 190 FNVKNVSVKELRRGYVAGDSKN 255
           FNVKNVSVKELRRGYVAGDSKN
Sbjct: 253 FNVKNVSVKELRRGYVAGDSKN 274


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 252  KQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLAIC 380
            K  TQ S  + + +     P S  +R HT  G+P  P     C
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQPPHDTTC 1090


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 395 KSTVVLVNQQRTTLNPLNLVMPALVNLGS 481
           KST   V  +R T+NP ++++      GS
Sbjct: 142 KSTTTTVEVKRDTINPEDVILIRRTGEGS 170


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -3

Query: 143 ISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 27
           + T++T+ +        ++ G  +P+++LP  +  I  I
Sbjct: 831 VVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSI 869


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 208 SVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPG 315
           S ++LR  ++A +   + P+G      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 179 TMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC 301
           ++ V TS + L  +  +    + R   HP EL+     S C
Sbjct: 402 SLFVETSASELVESSVLFPSLDSRDELHPRELEAVNLGSAC 442


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 395 KSTVVLVNQQRTTLNPLNLVMPALVNLGS 481
           KST+  V  +R  +NP ++++      GS
Sbjct: 131 KSTITTVEVKRDIINPEDVILIRRTGEGS 159


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 395 KSTVVLVNQQRTTLNPLNLVMPALVNLGS 481
           KST+  V  +R  +NP ++++      GS
Sbjct: 142 KSTITTVEVKRDIINPEDVILIRRTGEGS 170


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 395 KSTVVLVNQQRTTLNPLNLVMPALVNLGS 481
           KST      +R T+NP ++++      GS
Sbjct: 142 KSTTTTAEVKRDTINPEDVILIRRTGEGS 170


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 391 EKVDRRTGKSTEDNPKSIKSGDAG 462
           E   R T  + + +PK IK  DAG
Sbjct: 222 ESFHRLTSNTFDYDPKYIKMMDAG 245


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 255 QPTQGSCRLHSASHCAKSPRS 317
           Q TQ    LH  S  A+SP S
Sbjct: 665 QHTQSQLHLHLTSPPARSPSS 685


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +3

Query: 243  RFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLAICRNQRESRPS 407
            +  K P   S  ++  S    S   N+ R     G+P    ++   RNQ++   S
Sbjct: 1261 QMSKVPRDVSEGIYDGSGANGSFLDNLIRSSLETGIPRDQRAMTEARNQQQQASS 1315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,448
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)