Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L15
         (182 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856...    37   0.002
02_05_0505 - 29605860-29606102,29606331-29606677,29607291-296074...    36   0.005
08_02_1230 + 25419533-25420446,25421098-25421279,25422197-254225...    35   0.011
06_02_0009 + 10561257-10561751                                         26   4.9  
11_06_0337 - 22454281-22456399,22458520-22459388                       25   6.5  

>09_04_0587 +
           18782870-18783828,18784084-18784265,18785283-18785629,
           18786497-18786739
          Length = 576

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 27  RRFTIGVDGATLYLRIQWANXTGDAMGMNMVSKGL 131
           +R    V G  LY+R   +  TGDAMGMNMVSKG+
Sbjct: 328 QRVKCAVAGRNLYMRFSCS--TGDAMGMNMVSKGV 360


>02_05_0505 -
           29605860-29606102,29606331-29606677,29607291-29607472,
           29609540-29610282
          Length = 504

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 51  GATLYLRIQWANXTGDAMGMNMVSKGLPENXL 146
           G  LY+R  ++  TGDAMGMNMVSKG+ EN L
Sbjct: 264 GRNLYMR--FSCITGDAMGMNMVSKGV-ENVL 292


>08_02_1230 +
           25419533-25420446,25421098-25421279,25422197-25422543,
           25423327-25423557,25423680-25423775,25423934-25424044
          Length = 626

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 51  GATLYLRIQWANXTGDAMGMNMVSKGL 131
           G  LY+R      TGDAMGMNMVSKG+
Sbjct: 321 GRNLYMRFSCC--TGDAMGMNMVSKGV 345


>06_02_0009 + 10561257-10561751
          Length = 164

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 41  WRRRRHLIPKNSVGEXNRRRNGYEHGIQRVAG 136
           WRR        SVG+ N RR G E G Q  +G
Sbjct: 23  WRRPAGSQGGESVGDENERRGGDEIGRQARSG 54


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 71  NSVGEXNRRRNGYEHGIQRVAGKXALKL 154
           NSV E  RR+NG+ H ++++  + + KL
Sbjct: 327 NSVAEACRRQNGHVHKLKQLDPENSNKL 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,998,720
Number of Sequences: 37544
Number of extensions: 75496
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)