Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L15
         (182 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M11058-1|AAA52679.1|  888|Homo sapiens HMGCR protein.                  36   0.031
BC033692-1|AAH33692.1|  835|Homo sapiens HMGCR protein protein.        36   0.031
AY321356-1|AAP72015.1|  888|Homo sapiens 3-hydroxy-3-methylgluta...    36   0.031
AF273765-1|AAG21343.1|  888|Homo sapiens 3-hydroxy-3-methylgluta...    36   0.031

>M11058-1|AAA52679.1|  888|Homo sapiens HMGCR protein.
          Length = 888

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 45  VDGATLYLRIQWANXTGDAMGMNMVSKG 128
           + G  LY+R Q  + +GDAMGMNM+SKG
Sbjct: 638 IAGRNLYIRFQ--SRSGDAMGMNMISKG 663


>BC033692-1|AAH33692.1|  835|Homo sapiens HMGCR protein protein.
          Length = 835

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 45  VDGATLYLRIQWANXTGDAMGMNMVSKG 128
           + G  LY+R Q  + +GDAMGMNM+SKG
Sbjct: 585 IAGRNLYIRFQ--SRSGDAMGMNMISKG 610


>AY321356-1|AAP72015.1|  888|Homo sapiens
           3-hydroxy-3-methylglutaryl-Coenzyme A reductase protein.
          Length = 888

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 45  VDGATLYLRIQWANXTGDAMGMNMVSKG 128
           + G  LY+R Q  + +GDAMGMNM+SKG
Sbjct: 638 IAGRNLYIRFQ--SRSGDAMGMNMISKG 663


>AF273765-1|AAG21343.1|  888|Homo sapiens
           3-hydroxy-3-methylglutaryl-coenzyme A reductase protein.
          Length = 888

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 45  VDGATLYLRIQWANXTGDAMGMNMVSKG 128
           + G  LY+R Q  + +GDAMGMNM+SKG
Sbjct: 638 IAGRNLYIRFQ--SRSGDAMGMNMISKG 663


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,063,777
Number of Sequences: 237096
Number of extensions: 397057
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 76,859,062
effective HSP length: 40
effective length of database: 67,375,222
effective search space used: 1347504440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)