Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L15
         (182 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical p...    33   0.020
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical
           protein F08F8.2 protein.
          Length = 550

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +3

Query: 39  IGVDGATLYLRIQWANXTGDAMGMNMVSK 125
           I +DG   YLR      TGDAMGMNM+SK
Sbjct: 267 ITIDGNLAYLRFD--AHTGDAMGMNMISK 293


>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
           protein C54G7.4 protein.
          Length = 1199

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 5   EDALHVCKKIHXWRRRRHLIPKN 73
           + ALH CK+++ W++ + +   N
Sbjct: 891 QKALHACKELNQWQKAQFIADAN 913


>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 GYEHGIQRVAGKXALKLLKGYFP 172
           GY H I  VA +  +++L GY P
Sbjct: 314 GYNHQISAVAVQRCVRVLLGYAP 336


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical
           protein F41H10.6c protein.
          Length = 957

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 GYEHGIQRVAGKXALKLLKGYFP 172
           GY H I  VA +  +++L GY P
Sbjct: 316 GYNHQISAVAVQRCVRVLLGYAP 338


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical
           protein F41H10.6b protein.
          Length = 955

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 GYEHGIQRVAGKXALKLLKGYFP 172
           GY H I  VA +  +++L GY P
Sbjct: 314 GYNHQISAVAVQRCVRVLLGYAP 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,009,231
Number of Sequences: 27780
Number of extensions: 58388
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)