Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L15
         (182 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   5.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   5.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   5.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    19   7.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 39  IGVDGATLYLRIQW 80
           +GVD +  Y+ ++W
Sbjct: 197 VGVDLSEFYMSVEW 210


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 39  IGVDGATLYLRIQW 80
           +GVD +  Y+ ++W
Sbjct: 197 VGVDLSEFYMSVEW 210


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 83  EXNRRRNGYEHGIQRVAGKXALKLLKGYFPDME 181
           E + R + Y   I    G      LKGY  DME
Sbjct: 298 ETSTRTDAYTVEIVLEPGTGINVTLKGYCIDME 330


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 39  IGVDGATLYLRIQW 80
           IGVD +  Y  ++W
Sbjct: 193 IGVDLSEFYTSVEW 206


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 4/19 (21%), Positives = 11/19 (57%)
 Frame = +3

Query: 24  ARRFTIGVDGATLYLRIQW 80
           + +  +G+D    Y+ ++W
Sbjct: 184 SNQIEVGIDLTDYYISVEW 202


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +3

Query: 42  GVDGATLYLRIQW 80
           G+D +  YL ++W
Sbjct: 203 GIDLSDFYLSVEW 215


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 16  ARLQEDSXLASTAPPY 63
           ARL   S LAS A  Y
Sbjct: 128 ARLSRSSALASKATGY 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,361
Number of Sequences: 438
Number of extensions: 753
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)