Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L14
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0113 + 8526595-8527440,8527662-8528357                           29   1.8  
04_04_0255 - 23959997-23960048,23960380-23960450,23960499-239605...    27   5.6  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    27   7.3  

>05_03_0113 + 8526595-8527440,8527662-8528357
          Length = 513

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 175 NIRSECIM*LCCYVASNTSGVYCFLYRFKI----LLKLAYLIRDLSFNHITHRPV 327
           ++ ++C + +CC + ++ S V       KI    +  + Y +  L FNHI H P+
Sbjct: 215 HVVADCTIEVCCDICNSDSHVNHRCPILKIPKPSVQAVGYAVEGLGFNHIPHTPL 269


>04_04_0255 -
           23959997-23960048,23960380-23960450,23960499-23960595,
           23961189-23961277,23961510-23961635
          Length = 144

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 111 LKRIKIIGMCDTYTINRFPYSIIFLDTSCRI 19
           L R   IG CD Y I +F  ++IF +T+ R+
Sbjct: 86  LCRQTYIGYCDAYIIRKF--TLIFYETNLRV 114


>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
            18230710-18231949,18232085-18232419,18232500-18232577,
            18232872-18232978,18233020-18233062
          Length = 1506

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 120  PNNLKRIK-IIGMCDTYTINRFPYSIIFLDTSCRIRHE 10
            P+  K ++ I G+C   T+N    S IFLDT   + H+
Sbjct: 1201 PSGRKALQDITGLCQN-TVNSASLSSIFLDTGNELNHQ 1237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,414,891
Number of Sequences: 37544
Number of extensions: 162497
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)