Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L14
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    28   2.2  
Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   6.7  

>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 135 CERKTLGFSYIISEYTKRVHNVIMLLC 215
           C+ K +G S++   YT ++HNV +L+C
Sbjct: 13  CKNKIIGTSHLFI-YTYQLHNVAILMC 38


>Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical
           protein AH6.14 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 223 NTSGVYCFLYRFKILLKLAYLIRDLSFNHITHRPV*LQIDFNIAI 357
           +++G  CFL     +L   Y +   +  H+ H  +  Q DFN+ +
Sbjct: 233 DSTGTVCFLAFSLFILLFIYSVGVGALRHLLHENIISQEDFNLCV 277


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 401  TLRYCTHRNLYEHDGIAILKSICNYTGRCV 312
            T ++C  R   +H+  +  K++C  +G+C+
Sbjct: 3978 TGKHCEARGFEDHETSSCSKNVCGTSGQCI 4007


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 401  TLRYCTHRNLYEHDGIAILKSICNYTGRCV 312
            T ++C  R   +H+  +  K++C  +G+C+
Sbjct: 3978 TGKHCEARGFEDHETSSCSKNVCGTSGQCI 4007


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 401  TLRYCTHRNLYEHDGIAILKSICNYTGRCV 312
            T ++C  R   +H+  +  K++C  +G+C+
Sbjct: 3978 TGKHCEARGFEDHETSSCSKNVCGTSGQCI 4007


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,756,394
Number of Sequences: 27780
Number of extensions: 163061
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)