Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L13
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    50   2e-07
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    49   4e-07
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    37   0.002
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   3.3  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   7.7  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
 Frame = +1

Query: 82  RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGEMWKSMK--DKS 246
           ++K +   +PKRP SAY L+  + R +IK E  G K   V E+ K   E W S+   D+ 
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166

Query: 247 IWEEKAANAKEQYAKDLESYNAN 315
            +EE+A+  +E Y +++ +YNA+
Sbjct: 167 TYEEEASKLREAYEEEMAAYNAS 189


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
 Frame = +1

Query: 82  RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWE 255
           RKK+  T  PKR MSA+M +    RE++K+++P     ++    G+ WK +   ++  +E
Sbjct: 9   RKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYE 66

Query: 256 EKAANAKEQYAKDLESYN 309
           EKA   KE+Y ++ + Y+
Sbjct: 67  EKARQDKERYERERKEYD 84


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +1

Query: 76  AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 231
           ++RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +1

Query: 76  AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 231
           ++RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 100 TDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 225
           TDKP +  S     + L+   E  +S+HP + V  +   G E W
Sbjct: 119 TDKPSQSPSGNEVQVGLDMYNEGYRSDHPVIMVPGVISSGLESW 162


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 208 KGGEMWKSMKDKSIWEEKAANAKEQYAKDLESY 306
           K G +W +  D   W EK +    +Y KD  S+
Sbjct: 133 KLGLVWNTRDDTVPWIEKVSKILGRYRKDAPSF 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,691
Number of Sequences: 5004
Number of extensions: 34372
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)