Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L13
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 58 4e-09
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 58 6e-09
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 56 3e-08
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 54 6e-08
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 54 8e-08
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 53 2e-07
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 44 6e-05
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 44 8e-05
06_03_1487 + 30477615-30477658,30477778-30477891,30477941-304780... 40 0.001
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 40 0.002
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 39 0.002
08_02_1378 + 26536082-26537803 35 0.052
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611... 29 2.6
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 29 3.4
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 28 5.9
07_01_0135 - 989616-989702,990746-991013,991229-991566 28 5.9
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 28 5.9
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = +1
Query: 106 KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM--KDKSIWEEKAANAK 276
K KRP +A+ L+++ R++ K+EHP K V+ +AK+GGE WKSM +DK + +KAA K
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELK 150
Query: 277 EQY 285
+Y
Sbjct: 151 AEY 153
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 57.6 bits (133), Expect = 6e-09
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 15/90 (16%)
Frame = +1
Query: 85 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM--------- 234
K K +KPKRP SA+ +++ R+ K +HP +K V+ I K GG+ WKSM
Sbjct: 27 KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDAIRGYVV 86
Query: 235 -----KDKSIWEEKAANAKEQYAKDLESYN 309
KDK+ + KA K +Y K +++YN
Sbjct: 87 VAVPCKDKAPFVTKAEKLKAEYTKKIDAYN 116
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM--KDKSIW 252
RKK + KPKRP SA+ ++++ R++ ++ HP K V ++K GE W++M ++K+ +
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPY 83
Query: 253 EEKAANAKEQYAKDLESYN 309
+KA K+ Y K +++
Sbjct: 84 VDKAGQKKQDYEKTKANFD 102
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +1
Query: 85 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWEE 258
KK K + PKR ++ +M + + R +K+ +P L TEIAKK GE W+ M ++K + E
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVE 609
Query: 259 KAANAKEQYAKDLESY 306
++ K++YA++ +Y
Sbjct: 610 QSQVDKKRYAEESAAY 625
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 54.0 bits (124), Expect = 8e-08
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +1
Query: 85 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWEE 258
KK K + PKR M+ +M + + R +K+ +P L TEIAKK GEMW+ M ++K + +
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQ 650
Query: 259 KAANAKEQYAKDLESY 306
++ K++Y K+ Y
Sbjct: 651 QSQVDKKRYEKESAVY 666
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 103 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWEEKAANAK 276
++PK+P S+++L+ AR Q+ E PG+ + + WK + +K W KAA A
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471
Query: 277 EQYAKDLESY 306
Y +D+E Y
Sbjct: 472 AAYKRDMEEY 481
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWE 255
+KK K KPK+PMSAY ++ R + +E V EI + GE WK+M +K+ +E
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSEAEKAPFE 333
Query: 256 EKAANAKEQYAKDLESY 306
A +E+Y ++ +Y
Sbjct: 334 AAARKQREEYQVEMAAY 350
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 88 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWEEK 261
K K + K+P AY+LW +IK E P E++ G WK++ ++K +EE+
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEER 209
Query: 262 AANAKEQY 285
KE Y
Sbjct: 210 YRQEKEAY 217
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 64 FKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD 240
FK RKK KPKR ++ + +L R Q +HP K V + K GE W++M D
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
Query: 241 KSIWEEKA 264
EEKA
Sbjct: 70 ----EEKA 73
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +1
Query: 82 RKKNKMTDK--PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSI 249
RKK TD PK S Y + ++K E+PG + I+K GE W ++ +DK++
Sbjct: 365 RKKLSTTDPNHPKPNRSGYNFFFQDQHRKLKPEYPG-QDRLISKMIGERWNNLGPEDKAV 423
Query: 250 WEEKAANAKEQYAKDLESY 306
++EK K +Y + L Y
Sbjct: 424 YQEKGVEDKARYQRQLALY 442
>06_03_1487 +
30477615-30477658,30477778-30477891,30477941-30478028,
30478186-30478230,30478330-30478410,30478498-30478608,
30478907-30478927
Length = 167
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Frame = +1
Query: 85 KKNKMTDKPKRPMSAYMLWLNSA----------REQIKSEHPGLK-VTEIAKKGGEMWKS 231
K K +KPKR SA+ +++ + R++ K ++P K V + K G+ WKS
Sbjct: 34 KAGKDPNKPKRAPSAFFVFMGFSFDLVSLREEFRKEFKEKNPKNKSVAAVGKAAGDRWKS 93
Query: 232 MK--DKSIWEEKAANAKEQYAKDLESYN 309
+ DK+ + KA K +Y K + +YN
Sbjct: 94 LTEADKAPYVAKANKLKAEYNKAIAAYN 121
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWE 255
R+++ +P R SAY + ++K+ HP + E ++ G+ W + DK ++
Sbjct: 220 RQRDPAQPRPNR--SAYNFFFKEKHPELKATHPH-REREYSRMIGDAWNRLAADDKMVYY 276
Query: 256 EKAANAKEQYAKDLESYN 309
+A KE+Y ++++ YN
Sbjct: 277 RHSAEDKERYKREMQEYN 294
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 106 KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM--KDKSIWEEKAANAK 276
+PK+P +A+ ++ R+ K E+P +K + E+ K GE W +M +++ + + A +
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKR 107
Query: 277 EQYAKDLESYN 309
+Y K + ++
Sbjct: 108 AEYEKAVAEFD 118
>08_02_1378 + 26536082-26537803
Length = 573
Score = 34.7 bits (76), Expect = 0.052
Identities = 23/58 (39%), Positives = 31/58 (53%)
Frame = -3
Query: 383 GAAFLPFFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAAFSSQILLSFIDFHISPP 210
G+AFLP CAFL PL+L ++ A+CS+A S L+S I H+S P
Sbjct: 111 GSAFLPALASACAFLVARSHRLPLSLAEAAETAFCSVA----SLADLVSRIASHLSLP 164
>10_08_0745 -
20260136-20260236,20260890-20260937,20261025-20261165,
20261358-20261603,20261744-20262583,20263253-20263286
Length = 469
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 11 FFWFSTSTVWLCTSSKIISKFLPSGKKIK*RTSRS--GLCQPI-CCGSTVPENRSSLNIL 181
+ WF VWLC S ++S+ P K K S GL PI S +P N + + L
Sbjct: 15 YHWFVLFAVWLCGSQHVLSQKTPLEPKDKFLLSDPPIGLFDPIEISPSVLPHNANPVEPL 74
>03_05_0124 + 21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +1
Query: 46 HQFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 225
HQ ++ K I+K K+T P P +L + + E+I + + +I K+ E
Sbjct: 874 HQLSSSLKKLVIKKCEKLTRLPTIPNLTILLLMGNLSEEIHNS-LDFPMLQILKEWIEWQ 932
Query: 226 KSMKDKSIWEEKAANAKEQYAKDLESYNA 312
+S+ DK E+K + + D E+ A
Sbjct: 933 QSLIDK---EDKQQPEFDNASYDQEALGA 958
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 27.9 bits (59), Expect = 5.9
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = +1
Query: 46 HQFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 225
HQ K N IF RKK + +P + LWL S ++ S ++ + GG W
Sbjct: 620 HQ-KENISIFE-RKKTSTSSEPAKETDPMDLWLTSNAQESNSSKDANRIND--SSGG--W 673
Query: 226 KSMKDKSIWEEKAANAKEQYAKDLESYNA 312
+ + E AKD S +A
Sbjct: 674 QDFANFGQKESMKIPGVGHSAKDSSSNSA 702
>07_01_0135 - 989616-989702,990746-991013,991229-991566
Length = 230
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 169 SEHPGLKVTEIAKKGGEMWKSMKDKSIWEEKAANAKEQY-AKDLESYN 309
SEH +T++ G SM + WE++ A + Q+ KD+E N
Sbjct: 158 SEHKKNALTKVKSSGNTREHSMVLRDEWEDEIATLRLQFEQKDIEEEN 205
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 52 FKNNFKIFAIRKKNKMTDK--PKRPMSAYMLWLNSAREQIKSEHPGLK 189
F++ + R N++ K P R + +LWL E + S HPG +
Sbjct: 177 FRSQMQTIISRACNELGVKAVPSRRCVSLLLWLEERYETVYSRHPGFQ 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,281,235
Number of Sequences: 37544
Number of extensions: 206603
Number of successful extensions: 599
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -