Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L13
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 73 1e-13
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 70 1e-12
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 70 1e-12
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 66 2e-11
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 58 6e-09
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 58 6e-09
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 58 6e-09
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 58 6e-09
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 46 2e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 44 8e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 41 5e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 41 5e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 41 5e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 41 5e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 41 5e-04
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 40 0.002
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 34 0.081
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 34 0.081
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 34 0.081
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.25
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.25
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 32 0.25
Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical pr... 31 0.57
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 29 2.3
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 29 3.1
U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical pr... 27 9.3
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 27 9.3
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 72.9 bits (171), Expect = 1e-13
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 85 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWEE 258
KK+K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK WEE
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 259 KAANAKEQYAKDLESYNAN 315
KA K +Y K+++ Y N
Sbjct: 606 KAEEDKSRYEKEMKEYRKN 624
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +1
Query: 88 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWEEKAA 267
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS WE+KAA
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 268 NAKEQYAKDLESY 306
+ K++Y D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +1
Query: 88 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWEEKAA 267
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS WE+KAA
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 268 NAKEQYAKDLESY 306
+ K++Y D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +1
Query: 85 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWEE 258
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK W +
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWND 610
Query: 259 KAANAKEQYAKDLESYNAN 315
KAA K +Y +++ Y N
Sbjct: 611 KAAQDKARYEAEMKEYKKN 629
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWE 255
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++E
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 184
Query: 256 EKAANAKEQYAKDLESYNA 312
+KA K++YA ++ +Y A
Sbjct: 185 QKAQADKDRYADEMRNYKA 203
Score = 34.3 bits (75), Expect = 0.061
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +1
Query: 46 HQFKNNFKIFAIRKKNKMTDKPKR-PMSAYMLWLNSAREQIKSEHPG--LKVTEIAKKGG 216
HQ N M P R S Y ++ E+ K ++P ++VTEI+KK
Sbjct: 22 HQLPNPSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCS 81
Query: 217 EMWKSMKD--KSIWEEKAANAKEQYAKDL 297
E WK+M D K + E A E+Y ++
Sbjct: 82 EKWKTMVDDEKRRFYELAQKDAERYQAEV 110
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWE 255
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++E
Sbjct: 124 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 183
Query: 256 EKAANAKEQYAKDLESYNA 312
+KA K++YA ++ +Y A
Sbjct: 184 QKAQADKDRYADEMRNYKA 202
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +1
Query: 124 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD--KSIWEEKAANAKEQYAK 291
S Y ++ E+ K ++P ++VTEI+KK E WK+M D K + E A E+Y
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQA 109
Query: 292 DLESY 306
++ +Y
Sbjct: 110 EVAAY 114
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWE 255
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++E
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185
Query: 256 EKAANAKEQYAKDLESYNA 312
+KA K++YA ++ +Y A
Sbjct: 186 QKAQADKDRYADEMRNYKA 204
Score = 33.9 bits (74), Expect = 0.081
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 124 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD--KSIWEEKAANAKEQYAK 291
S Y ++ E+ K ++P ++VTEI+KK E WK+M D K + E A E+Y
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQA 109
Query: 292 DL 297
++
Sbjct: 110 EV 111
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWE 255
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++E
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185
Query: 256 EKAANAKEQYAKDLESYNA 312
+KA K++YA ++ +Y A
Sbjct: 186 QKAQADKDRYADEMRNYKA 204
Score = 33.9 bits (74), Expect = 0.081
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 124 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD--KSIWEEKAANAKEQYAK 291
S Y ++ E+ K ++P ++VTEI+KK E WK+M D K + E A E+Y
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQA 109
Query: 292 DL 297
++
Sbjct: 110 EV 111
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +1
Query: 94 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWEEKAA 267
K D+ KRPM+A+M+W R+++ E+P + +EI+K+ G WK S ++K + ++A
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAK 114
Query: 268 NAKEQYAKDLESY 306
+ + K+ Y
Sbjct: 115 RLRAIHMKEHPDY 127
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 94 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWEEKA 264
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D EEKA
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTD----EEKA 140
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +1
Query: 103 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWEEKAANAK 276
D KRPM+A+M+W R ++ ++P + +EI+K+ G WK S ++K + ++A +
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLR 105
Query: 277 EQYAKDLESY 306
+ K+ Y
Sbjct: 106 ALHMKEHPDY 115
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 240
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 240
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 240
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 240
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 82 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 240
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 109 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWEEKAANAKEQ 282
P+RP+ YM + ++++E+P ++ +I K G+ W + D KS ++ + K
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 283 YAKDLESYNAN 315
Y K ++ + N
Sbjct: 86 YEKQMKHFQGN 96
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 33.9 bits (74), Expect = 0.081
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 82 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKS 246
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+ K+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKA 890
Query: 247 IWEEKAANAKEQYAK 291
+ + A KE + K
Sbjct: 891 EYHKLATQVKEAHFK 905
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 33.9 bits (74), Expect = 0.081
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 82 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKS 246
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+ K+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKA 890
Query: 247 IWEEKAANAKEQYAK 291
+ + A KE + K
Sbjct: 891 EYHKLATQVKEAHFK 905
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 33.9 bits (74), Expect = 0.081
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 82 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKS 246
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+ K+
Sbjct: 66 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKA 125
Query: 247 IWEEKAANAKEQYAK 291
+ + A KE + K
Sbjct: 126 EYHKLATQVKEAHFK 140
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 97 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWEEKAAN 270
MT K + S Y+L+ R++I E+P E++K G WK + + K +E +A
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 1504
Query: 271 AKEQYAK 291
+ AK
Sbjct: 1505 VAVEKAK 1511
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 97 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWEEKAAN 270
MT K + S Y+L+ R++I E+P E++K G WK + + K +E +A
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 1504
Query: 271 AKEQYAK 291
+ AK
Sbjct: 1505 VAVEKAK 1511
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 97 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWEEKAAN 270
MT K + S Y+L+ R++I E+P E++K G WK + + K +E +A
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 134
Query: 271 AKEQYAK 291
+ AK
Sbjct: 135 VAVEKAK 141
>Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical
protein K09C8.2 protein.
Length = 251
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 260 FSSQILLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 141
F LL+++ FH+ F A+SV+F + +C + LLS
Sbjct: 37 FIMACLLNYVSFHVGNDFYAVSVSFVHVGAVFVCIVILLS 76
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -3
Query: 236 FIDFHISPPFLAISVTFSPGCS-DLICSLALLSHSI*ADIG-RFGLSVILFFF-LMAKIL 66
FI S + IS+ + GCS +I A + + +G F L + L F LMA I
Sbjct: 4 FITATYSADAVLISLLITTGCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIF 63
Query: 65 KLFLNW 48
+FLNW
Sbjct: 64 CIFLNW 69
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +1
Query: 88 KNKMTDKPKRPMSAYMLWLNSAREQIKSE--HPGLKVTEIAKKGGEMWK--SMKDKSIWE 255
K K D K+P++A+M ++ R+ + E + + E+ K+ G+ W S ++++ +
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYF 243
Query: 256 EKAANAKEQYAKDLESYNA 312
E A KE + + ++A
Sbjct: 244 EMAKKDKETHKERYPEWSA 262
>U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical
protein T20F7.7 protein.
Length = 497
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 269 LAAFSSQILLSFIDFHISPPFLAISVTFSPGCSDLICS 156
L A SS L+F+ FH + F A+ + GC+ I S
Sbjct: 196 LLAQSSMKTLAFLPFHHASGFWALLICLLEGCTTYIMS 233
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 91 NKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWEEKA 264
N T K ++ +W R+QI + ++I+K G W+ M+ +K + E+A
Sbjct: 96 NVQTWKIRKSNDYIKVWSQQRRQQIAATGQKFHNSDISKMLGAEWRKMEEHEKVPFVERA 155
Query: 265 ANAKEQY 285
+E++
Sbjct: 156 KQLREEH 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,902,003
Number of Sequences: 27780
Number of extensions: 192369
Number of successful extensions: 604
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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