Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L12
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 30 0.94
09_04_0085 + 14441123-14443507,14443731-14443787 27 6.6
08_02_0009 + 11216532-11218687,11220727-11225998 27 6.6
08_02_0008 + 11212351-11214506,11214548-11214584 27 6.6
08_02_0007 + 11208170-11210325,11210367-11210403 27 6.6
08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391 27 6.6
08_02_0003 + 11180421-11180757,11180773-11185715 27 6.6
08_02_0002 + 11173365-11173512,11173528-11178470 27 6.6
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827... 27 6.6
>03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 29.9 bits (64), Expect = 0.94
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 85 SIIKFAELALTCSCVALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAGYIMQT--PSHK 258
S++++A LA T + + HY ++ P G + T + +F+G Y+ ++ PS K
Sbjct: 1030 SVLEYA-LAFTSAALDRHYSKWSATPKTGFIDITTSKDFYRVFSGLQYSYLEESINPSRK 1088
Query: 259 R 261
+
Sbjct: 1089 Q 1089
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 426 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 457
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 413 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 444
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 1127 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 1158
>08_02_0008 + 11212351-11214506,11214548-11214584
Length = 730
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 413 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 444
>08_02_0007 + 11208170-11210325,11210367-11210403
Length = 730
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 413 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 444
>08_02_0004 + 11187587-11187923,11187939-11189861,11190195-11190391
Length = 818
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 421 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 452
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 411 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 442
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 327 VNDDSTTGDE*GNTDQRIENINTLVRRGLHNI 232
+N+ +E NT+Q + INTL GLHN+
Sbjct: 348 INEMENIENEIDNTEQYNDFINTLDEVGLHNL 379
>05_03_0085 -
8271718-8272005,8272110-8272393,8273610-8274012,
8274792-8274816,8275686-8276149
Length = 487
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 190 FVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAVIIDKYQHYGK 348
F+GY+I FAG +G + ++ SL G+++ +I + H K
Sbjct: 351 FLGYIIGFAGVVSGIALYNRTYSNFTTHRSL-GISVLALGSLQVIAFFLHPNK 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,614,616
Number of Sequences: 37544
Number of extensions: 225566
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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