Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L12
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    29   1.9  
Z34799-3|CAA84316.3|  539|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical
           protein C11E4.7 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 385 MMLLPDSCPLIHSCHSVDI 329
           + LLP SCP  HS H++DI
Sbjct: 42  LTLLPTSCPQCHSLHTLDI 60


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 234  ISCSCTGKDDQIADKGARDEHADVW 160
            ++C C   D+++   GARDE   VW
Sbjct: 1381 VTCCCISFDERLVVSGARDEKIIVW 1405


>Z34799-3|CAA84316.3|  539|Caenorhabditis elegans Hypothetical
           protein F34D10.6 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 279 RIENINTLVRRGLHNISCSCTGKDDQIADKGARDEHAD 166
           +I+  +TL R  LH  +C      D + D GAR + AD
Sbjct: 423 QIDLTDTLGRTALHYAACQQNAIYDSLVDLGARKDLAD 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,464
Number of Sequences: 27780
Number of extensions: 195593
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)