Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L12
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   3.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   3.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 127 VALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAGYIMQTP 249
           V  +Y++Y G   I  +++GT   Y +  A  A   ++ TP
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAY-MVVDTP 475


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 383 HWPSSTVLCYLWTLF 427
           +W   T++C LW  F
Sbjct: 106 NWSFGTIMCDLWVSF 120


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 127 VALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAGYIMQTP 249
           V  +Y++Y G   I  +++GT   Y +  A  A   ++ TP
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAY-MVVDTP 475


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = +1

Query: 94  KFAELALTCSCVALHYHSYNGEPDIGMLVTGTFVGYLIIFAGAAAG 231
           K   + ++C C         G    G +VTG   G +++ A    G
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSSSAGGVVTGASGGSIVVGANNGGG 48


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 194 TKVPVTSMPMSGSPL 150
           T VP+TS+P S + +
Sbjct: 852 TTVPITSLPASSTSI 866


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,795
Number of Sequences: 438
Number of extensions: 2261
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)