Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L11
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 2.1
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 27 2.8
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 4.8
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 25 6.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 6.4
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 8.5
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 8.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 8.5
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 48 KNNTAISKQTGGPAMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSD 188
K N +K +G P +++ PN + + L SN +L+SY+SD
Sbjct: 966 KRNFLQNKLSGNP-IISTPNFLTHFALAYQEYELESNIDNLSSYISD 1011
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 2.8
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Frame = +3
Query: 309 EREVVGKSPALREDXXXXXXXXXXXXXXXDLPSGIDLNSELS---EHYDLENANFIATSD 479
+ ++VGK+PA +ED PS + + S +S D N +++D
Sbjct: 117 KEKLVGKNPAEKEDTTDVEDTQKLEQKHSTTPSSLKMKSSISLAAITADDSLHNSFSSND 176
Query: 480 IDIVYHYKGFREAAGARKY---KATPP 551
ID GF+ +R Y K+T P
Sbjct: 177 ID-----DGFQTVTSSRSYGKKKSTEP 198
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 12 KQKKEKGSGTGSKNNTAIS-KQTGGPAMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSD 188
++ + K S + S++N AIS + GP + NL GT+ + L + LN ++D
Sbjct: 74 RENQTKPSNSNSQSNGAISIRGIAGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVND 133
Query: 189 N 191
+
Sbjct: 134 S 134
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 72 QTGGPAMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSDNADITRNVGHI 221
Q GG + +++ N+ ND+ N + D LN Y+S+ D RNV +
Sbjct: 3 QNGGNSYVDS-NMNETQNDTTDNFDAEMQD--LNGYISEIVDEARNVSEV 49
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 175 LLRLVSLLCKFLFIILSLVPAIKFGAF--NIAGPPVCFE 65
LLR VS + KF+ I++ ++ AI FG N G FE
Sbjct: 174 LLR-VSFIFKFVIIVVGIICAIAFGGLHHNYRGRSARFE 211
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 48 KNNT---AISKQTGGPAMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSDNADITRNVGH 218
KNNT + Q+ GP + P+L+A + N H SL+ + D+T + H
Sbjct: 345 KNNTHSNRVLSQSSGPIV--RPSLLAALDFRSSNEEQHPGLRSLDPLNIQDGDLTMHPMH 402
Query: 219 I 221
I
Sbjct: 403 I 403
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 111 IAGTNDSIMNRNLHSNDTSLNSYMSDNAD 197
I G NDSI ++N S T +++ S N++
Sbjct: 327 IVGNNDSIPSQNFKSGKTFVSNANSSNSN 355
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 303 IIEREVVGKSPALREDXXXXXXXXXXXXXXXDLPSGIDLNSELSEH 440
I+ RE + ALRE D+ S + LN L EH
Sbjct: 98 IVSRESLSVGDALRELDSKQLITSDFILVSGDVVSNVPLNEVLKEH 143
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Frame = +3
Query: 48 KNNTAISKQTGGPAML---------NAPNLIAGTNDSIMNRNLHSNDTS 167
+NN+++++ T P++ N NL++ N +I N N + NDT+
Sbjct: 49 ENNSSLTRSTDDPSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTT 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,346
Number of Sequences: 5004
Number of extensions: 37964
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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