Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L11
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    31   0.53 
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046...    29   2.2  
01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356     28   5.0  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   6.6  

>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
 Frame = +3

Query: 30  GSGTGSKNNTAISKQTGGPA--MLNAPNLIAG--TNDSIMNRNLHSNDTSLNSYMSDNAD 197
           GS  GSK  ++ S+    P   + N P++ A   T DS+ + ++ ++DTS +   SD +D
Sbjct: 711 GSSDGSKGYSSSSEVKNMPKNFLSNPPSVDAEAKTTDSVSSSSIDASDTSASIDASDISD 770

Query: 198 ITR 206
           IT+
Sbjct: 771 ITQ 773


>01_03_0071 +
           12203227-12203368,12203551-12203703,12204622-12204683,
           12204749-12204830,12206029-12206126,12206240-12206657,
           12206793-12206915,12207159-12207178
          Length = 365

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/100 (22%), Positives = 47/100 (47%)
 Frame = +3

Query: 9   RKQKKEKGSGTGSKNNTAISKQTGGPAMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSD 188
           ++++K++        NT+  K   G A L    +  G NDS+ N+++  + T  N + + 
Sbjct: 187 KQEQKDQQLPIDDNTNTSSIKSQQGSASLQQQIMNYGENDSMDNQSIILSQTRYNEHSNK 246

Query: 189 NADITRNVGHIVGPELLSKKYKDRDIMNIDHPRPQRPDII 308
              +     H  GP+ +   +K+ ++   +  RP  P++I
Sbjct: 247 QPKLLTANYH--GPKNMHHHHKNTNMQPSNVLRP--PNLI 282


>01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356
          Length = 354

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 9   RKQK--KEKGSGTGSKNNTAISKQTGGPAMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYM 182
           RK K  +++G G   K N A S  + G    +AP      +  + N  L SNDT    Y+
Sbjct: 61  RKSKGGRDEGGGDEPKKNKAASSSSSGKGDASAP------SGDVSNNELQSNDT---MYV 111

Query: 183 SDNADITRNV 212
             N    R+V
Sbjct: 112 PGNLSYWRDV 121


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
 Frame = +3

Query: 39  TGSKNNTAISKQTG-GPAMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSDNADITRNV- 212
           T  K  + ++K+ G G   + A   I    DS+ N N + +DTS      D  D   N  
Sbjct: 105 TEEKRKSLLAKRHGKGADFVRAVKEIVEIYDSLKNENNNKSDTSGTDVKPDVEDAAHNSN 164

Query: 213 ----GHIVGPELLSKKYKD-RDIMNIDHPRPQRP 299
               G   G +L++   +D R   ++DH   + P
Sbjct: 165 SDRGGRGEGSDLVNDNKQDSRPTSSMDHNVTKSP 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,482
Number of Sequences: 37544
Number of extensions: 216753
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)