Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L11
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-4|CAA98068.2|  453|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    30   1.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    30   1.1  
AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical ...    28   5.9  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z73898-4|CAA98068.2|  453|Caenorhabditis elegans Hypothetical
           protein ZK822.4 protein.
          Length = 453

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 45  SKNNTAISKQTGGPAMLNAPNLIAGTN--DSIMNRNLHSNDTSLNSYMSDNADITRNVGH 218
           SKN T ++++     ++N PN++       S  N+ +    T + +Y++   D TR++  
Sbjct: 206 SKNATVVAEEHANVVVMNLPNVLNNLKAISSDKNQTVVEMHTRMMAYVNSLDDDTRDIVF 265

Query: 219 IVGPELLSKKYK 254
           I    LL  ++K
Sbjct: 266 IFFRNLLPPQFK 277


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 48   KNNTAISKQTGGP--AMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSDNADITRNVGHI 221
            +NN  +   TG    A  +A N++ G +DS++  +LH + T+ ++    N D    +G  
Sbjct: 4162 ENNVVVGSMTGKDCRAKGDAANVMIGADDSLVQLSLHGSGTNRHAAAKANDDDNDIIGIA 4221

Query: 222  VGP 230
              P
Sbjct: 4222 FDP 4224


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 48   KNNTAISKQTGGP--AMLNAPNLIAGTNDSIMNRNLHSNDTSLNSYMSDNADITRNVGHI 221
            +NN  +   TG    A  +A N++ G +DS++  +LH + T+ ++    N D    +G  
Sbjct: 4162 ENNVVVGSMTGKDCRAKGDAANVMIGADDSLVQLSLHGSGTNRHAAAKANDDDNDIIGIA 4221

Query: 222  VGP 230
              P
Sbjct: 4222 FDP 4224


>AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical
           protein F53H1.4b protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   RRKQKKEKGSGTGSKNNTAISKQTGGPAMLNAP 104
           R+ +KKEK +GT  K    + K TG P+  NAP
Sbjct: 253 RKAEKKEKNNGTMDK---FLKKDTGSPSSKNAP 282


>AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical
           protein F53H1.4c protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   RRKQKKEKGSGTGSKNNTAISKQTGGPAMLNAP 104
           R+ +KKEK +GT  K    + K TG P+  NAP
Sbjct: 289 RKAEKKEKNNGTMDK---FLKKDTGSPSSKNAP 318


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   RRKQKKEKGSGTGSKNNTAISKQTGGPAMLNAP 104
           R+ +KKEK +GT  K    + K TG P+  NAP
Sbjct: 289 RKAEKKEKNNGTMDK---FLKKDTGSPSSKNAP 318


>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 141 RNLHSNDTSLNSYMSDNADITRNVGHIVGPELLSKKYKDRDIMNI 275
           +N  SNDT L  Y+  N   T  V  ++ PE +   YKD +IMN+
Sbjct: 88  KNGFSNDTML--YIP-NLSNTSLVSSLISPEEIKPFYKDDEIMNV 129


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 141 RNLHSNDTSLNSYMSDNADITRNVGHIVGPELLSKKYKDRDIMNI 275
           +N  SNDT L  Y+  N   T  V  ++ PE +   YKD +IMN+
Sbjct: 88  KNGFSNDTML--YIP-NLSNTSLVSSLISPEEIKPFYKDDEIMNV 129


>AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical
           protein Y9D1A.1 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
 Frame = +3

Query: 21  KEKGSGTGSKNNTA-ISKQTGGPAMLNAPNLIAGTNDS--IMNRNLHSNDTSLNSYMSDN 191
           K+   G+G K+    I  +  G    N   ++ G+ ++  ++ ++L+     L  Y S+ 
Sbjct: 79  KDDEEGSGRKDRAGRIGPEGSGRKDRNETTMVRGSPETWTMVRKDLNDASAKLIFYRSNR 138

Query: 192 ADITRNVGHIVGPELLSKKYKDRDIMNIDHPRPQRPDIIEREVVGK 329
               ++    +GPE   +K +D   M    P        +++ VG+
Sbjct: 139 KTTKKDRAGRIGPEGSGRKDRDETTMVRGSPETSTIKTTKKDRVGR 184


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
           protein C37C3.6c protein.
          Length = 1487

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 44  QQKQYRYFKTNWWPCNVKCSK 106
           ++  Y Y   NW PC+V C K
Sbjct: 339 EEVDYMYKFDNWTPCSVSCGK 359


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
           protein C37C3.6a protein.
          Length = 1558

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 44  QQKQYRYFKTNWWPCNVKCSK 106
           ++  Y Y   NW PC+V C K
Sbjct: 339 EEVDYMYKFDNWTPCSVSCGK 359


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
           protein C37C3.6b protein.
          Length = 2167

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 44  QQKQYRYFKTNWWPCNVKCSK 106
           ++  Y Y   NW PC+V C K
Sbjct: 339 EEVDYMYKFDNWTPCSVSCGK 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,577,728
Number of Sequences: 27780
Number of extensions: 205834
Number of successful extensions: 721
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)