Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L11
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 308 YYIWSLWSWM 279
           YY+ SLW W+
Sbjct: 276 YYVMSLWYWI 285


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 564 YHHKHQSTQHRH 599
           +HH+ QS QH H
Sbjct: 354 HHHQTQSLQHLH 365


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -1

Query: 533 LSCSSGFSKSFIMIYNIYIGSC 468
           +SC  G  K  + I+N     C
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVC 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,305
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)