Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L09
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    29   1.9  
08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597     28   4.3  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    28   4.3  
04_01_0371 - 4888771-4890048                                           27   5.7  
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320...    27   10.0 

>05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,
            8427110-8427205,8427530-8427616,8428639-8428767,
            8428922-8429098,8429185-8429295,8429642-8429761,
            8430767-8432427,8432485-8432867,8433707-8434470,
            8434532-8434813,8436158-8436493
          Length = 1523

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 68   NFKTRTKALAPPPRAEFL 15
            NFKT T  +APPP A FL
Sbjct: 1276 NFKTMTTFIAPPPSATFL 1293


>08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597
          Length = 184

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 49  RRWPRPLVPNSCST 8
           RRWPRPL+P S S+
Sbjct: 61  RRWPRPLIPVSSSS 74


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 73  LTISKQEQRRWPRPLVPNSCST 8
           L  S +E+RR P PL P SC T
Sbjct: 156 LRSSDEERRREPSPLTPTSCLT 177


>04_01_0371 - 4888771-4890048
          Length = 425

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   VLQEFGTRGRGQRLCSCFEIVKA 77
           V  EFG+R  G R CS FE V A
Sbjct: 230 VKAEFGSRHAGDRPCSVFEAVTA 252


>12_01_0404 +
           3200787-3200898,3201016-3201091,3201442-3201544,
           3202109-3202160,3202239-3202333,3202703-3202768,
           3202910-3203419,3203598-3203756,3204022-3204321,
           3204867-3205193,3205548-3205754,3205978-3206076,
           3206193-3206251,3206294-3206639
          Length = 836

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 298 CNLKNYRHHFLLMNFLQINKLV*HVF 375
           CN K+Y  H LL + +QI + V H+F
Sbjct: 515 CNYKDYNMHPLLSSVVQIIRGVAHLF 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,463,466
Number of Sequences: 37544
Number of extensions: 150052
Number of successful extensions: 326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)