Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L08
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   6.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   6.9  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
 Frame = -3

Query: 336 ARVSSPAAD----SPSPGVPTTSAYN 271
           +R S+PA+     SP+ G PTTSAYN
Sbjct: 293 SRGSTPASATVPISPARGFPTTSAYN 318


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 132 RQVGLRWCSLSTSVH*EGTQVAHVPTWW----WRSR*HGLIRFFASVVSDRYK 278
           ++  LRWC L+ S++    Q A  P  W    ++ R     R F++V+S  Y+
Sbjct: 738 KRQNLRWCMLACSMYARDPQGALTPLRWVFTTFQFR-QDTYRLFSAVLSQGYE 789


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -3

Query: 516 LIFVATATSHQYRHSDTVNSY----HGLPEPEL 430
           LI +  +   Q+RHSD +N +    HG+  PE+
Sbjct: 87  LIKIFYSNELQFRHSDNINKFLDFIHGIGLPEI 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,066
Number of Sequences: 5004
Number of extensions: 40056
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)