Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L08
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 31 0.77
01_01_1136 + 9012069-9012317,9013547-9013722,9014342-9014425,901... 30 1.3
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668... 29 2.3
03_04_0029 - 16610182-16611753 29 2.3
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 3.1
06_01_0008 + 141405-142421 28 5.4
12_01_0331 + 2561837-2562430 28 7.1
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24... 28 7.1
09_06_0137 - 21080263-21081894 28 7.1
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 28 7.1
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 7.1
02_01_0586 - 4334896-4335177,4336340-4338007 28 7.1
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 27 9.4
08_01_1058 + 10765837-10766325 27 9.4
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 27 9.4
05_04_0326 + 20294334-20295007,20295210-20295291,20295391-202955... 27 9.4
05_03_0029 - 7525408-7525634,7526253-7526457 27 9.4
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 528 SKPILIFVATATSHQYRHSDTVNSYHGLPEPELHP 424
S P + + T + RHS+ VN HGL + HP
Sbjct: 46 SDPDMALTSLMTQKEQRHSERVNGGHGLADGNRHP 80
>01_01_1136 +
9012069-9012317,9013547-9013722,9014342-9014425,
9014757-9014826,9015644-9015652
Length = 195
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 118 APWRAPDLRDAVQAIPYV 65
APWRAP +AV A+PY+
Sbjct: 22 APWRAPPDAEAVDALPYI 39
>09_04_0687 +
19465594-19465780,19465994-19466022,19466731-19466803,
19467237-19467311,19467583-19467644,19467727-19467795,
19468447-19468475,19468553-19468760,19468867-19469100,
19469591-19470598
Length = 657
Score = 29.5 bits (63), Expect = 2.3
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Frame = -3
Query: 537 HCSS-KP-ILIFVATATSHQYRHSDTVNSYHGLPEPELHPQ-----PGLRARNVFPVACT 379
H SS +P I + V+ TS S + H LP P + P L A + V +
Sbjct: 503 HSSSHQPSIHVRVSPNTSPPLLSSPKIKELHELPRPPANASKHTTFPSLVAHSAPLVPNS 562
Query: 378 A-LAPRSDAHHRATLARVSSPAADSPSPGVP 289
A LAPR H R S+P SP P P
Sbjct: 563 APLAPRGQDHFRPRQTPPSAPQTASPLPTPP 593
>03_04_0029 - 16610182-16611753
Length = 523
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 420 PGLRARNVFPVACTALAPRSDAHHRATLARVSSPAADSPSPGVPTTSA 277
P + ++ V L+P S A A ++SPAA SPS VP++S+
Sbjct: 51 PAAQQDDIGSVVAQTLSPPSTAAPAAASPSIASPAASSPS-DVPSSSS 97
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = -3
Query: 450 GLPEPELHPQPGLRARNVFPVACTALAPRSDAHHRATLARVSSPAADSPSPGVPTTSAY 274
G P+P+ +P+PG P A AP AHH+ A +PSPGVP Y
Sbjct: 58 GPPQPQ-YPRPG-------PPAVVYGAPMPAAHHQG--AYQPGGVYRAPSPGVPVIGGY 106
>06_01_0008 + 141405-142421
Length = 338
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 444 PEPELHPQPGLRARNVFPVACTALAPRSDAHHRATLARVSSPAADSPSP 298
P P +P P L FP A +P D + + LA P + SPSP
Sbjct: 51 PNPNPNPSPFLPHHPFFPFA----SPSFDLRNPSDLAAFFGPPSPSPSP 95
>12_01_0331 + 2561837-2562430
Length = 197
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 346 SMVSIGTRSEGGAGDGEDISRSESWLW 426
S +G R GG G G+D SW W
Sbjct: 131 SSYPVGRRYHGGGGCGDDDDDDASWRW 157
>11_01_0031 +
248264-248513,248519-249007,249178-249445,249631-249718
Length = 364
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 381 TALAPRSDAHHRATLARVSSPAADSPSPGVPTTSA 277
T L P D + R+++ AD P+P PTTS+
Sbjct: 150 TLLLPLPDGGNIKAALRIAAVQADHPAPDDPTTSS 184
>09_06_0137 - 21080263-21081894
Length = 543
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 444 PEPELHPQPGLRARNVFPVACTALAPRSDAHHRATL-ARVSSPAADSPS 301
PEPEL P+P L P TA DA H A + R + PAA P+
Sbjct: 37 PEPELEPEPALA-----PSLTTAETKLLDALHAALVDHRRAHPAAPVPA 80
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = -3
Query: 453 HGLPEPELHPQPGLRARNVFPVACTALAPRSDAH---HRATLARVSSPAA--DSPSPGVP 289
HG PE P+P + +R A TA +PR H +R + PA+ +P+ P
Sbjct: 89 HGYRLPESPPRPRVASRRQSTHAPTAPSPRQPGRLPAHLTVASRAAQPASRLRAPARASP 148
Query: 288 TTSAYN-GHLQR*RR 247
+ A G R RR
Sbjct: 149 SPDAQTPGRRSRPRR 163
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 411 RARNVFPVACTALAPRSDAHHRATLARVSS-PAADSPSP 298
R R P A A A SD HH + ++ A+DSP P
Sbjct: 55 RGRKPKPPAAAAAAASSDGHHHPSSPLAAAVSASDSPDP 93
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -3
Query: 477 HSDTVNSYHGLPEPELHPQPGLRARNVFPVACTALAPRSDAHHRATLARVSSPAADSPSP 298
H+ +S P P +P A++ A A D H R+ + + P + +PSP
Sbjct: 23 HASDASSDFATPPPSSSAKPSA-AKSSAAAATPASIDAIDRHLRSLHLKYAEPISPNPSP 81
Query: 297 GVPTTSA 277
PT++A
Sbjct: 82 S-PTSAA 87
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 426 PQPGLRARNVFPVACTALAPRSDAHHRATLARVSSPAADSPSPGVP 289
P P LRAR V A PR+ A A + PA S P P
Sbjct: 728 PAPHLRARRVPTAPPAAARPRAPTPPAAAAAPAAPPAPPSGLPSWP 773
>08_01_1058 + 10765837-10766325
Length = 162
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 399 VFPVACTALAPRSDAHHRATLARVSSPAADS-PSPGVPTT 283
V V TAL S HHR A V P+A S PS V ++
Sbjct: 58 VIIVVLTALPSSSSQHHRRCTASVGRPSAPSWPSLNVASS 97
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 172 TLVE-SEHHRSPTCRPLDTAPWRAPDLR 92
TLVE +H +SP RPL +PDLR
Sbjct: 115 TLVEVRQHEKSPDLRPLPLLKQPSPDLR 142
>05_04_0326 +
20294334-20295007,20295210-20295291,20295391-20295502,
20295602-20295723
Length = 329
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 134 TSWTPMVLALHERSLR-RDSSSTCSHLVVAVSVTWAHQILR*RC 262
T + P+++ +H R R +D+ + LV A+ + W + + RC
Sbjct: 210 TDFGPLIVLVHNRYKRPQDNENARDQLVKAIEMFWEYNLPSPRC 253
>05_03_0029 - 7525408-7525634,7526253-7526457
Length = 143
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 426 GEARARGVRDMS*RCRSVCTGGWLP*LRKSRW 521
G A RG+ D CR C GG LR+ RW
Sbjct: 109 GRAVTRGLSDGG-GCRRTCEGGLRADLRQQRW 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,373
Number of Sequences: 37544
Number of extensions: 355700
Number of successful extensions: 1519
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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