Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L08
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    31   0.69 
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    29   2.8  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    29   2.8  

>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 399 VFPVACTALAPRSDAHHRATLA-RVSSPAADSPSPGVPTTSAYNG 268
           V   +C  + PR D +  +TLA  V  P   +P    PTT A  G
Sbjct: 17  VLTESCMRMVPRKDVYISSTLAPEVDPPTTLAPETAAPTTHAETG 61


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
            exchange factorfor RAS protein.
          Length = 1413

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = -3

Query: 507  VATATSHQYRHSDTVNSYHGLPEPELHPQPGLRARNVFPVACTALAP-RSDAHHRATLAR 331
            ++TATS     + T  S  G P P+LHP+  +  + + P+A + L P R ++   A    
Sbjct: 1307 MSTATSPTTLTTTTTPSSAGGPPPKLHPR-RMTQQPMSPLAKSPLTPSRDNSSPSAFQFP 1365

Query: 330  VSSPAADSPS-PGVPTTSA 277
            V   A+ +P  P  P+TS+
Sbjct: 1366 VVYEASTAPPLPPRPSTSS 1384


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
            homolog protein 1 protein.
          Length = 1493

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = -3

Query: 507  VATATSHQYRHSDTVNSYHGLPEPELHPQPGLRARNVFPVACTALAP-RSDAHHRATLAR 331
            ++TATS     + T  S  G P P+LHP+  +  + + P+A + L P R ++   A    
Sbjct: 1307 MSTATSPTTLTTTTTPSSAGGPPPKLHPR-RMTQQPMSPLAKSPLTPSRDNSSPSAFQFP 1365

Query: 330  VSSPAADSPS-PGVPTTSA 277
            V   A+ +P  P  P+TS+
Sbjct: 1366 VVYEASTAPPLPPRPSTSS 1384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,503,468
Number of Sequences: 27780
Number of extensions: 250127
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)