Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L07
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.8  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    25   4.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.3  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   6.3  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   6.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.3  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 275 HSPSPTFR-SVSLCSQL*LFMTQTLPKDFGFSPFLLAQ 165
           H   P F  + +L  QL +F   + PKD GFS  L +Q
Sbjct: 99  HPFYPVFEVNSNLYYQLLMFTNYSNPKDNGFSKLLFSQ 136


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 QRYTAESRRWRVCWFRRNSPLLI*TTKPQWNLS 338
           ++ T +   +R CW +R+ PL   + K   NLS
Sbjct: 45  RKCTEQMEEFRKCWEKRHGPLPSISDKKNKNLS 77


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 290 PSEPAHSPSPTFRSVS 243
           P EP  SPSP F SV+
Sbjct: 35  PKEPTCSPSPAFYSVN 50


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 235 HSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSRED 128
           H  +YS +   +R   S  SY RRS    R Y+R D
Sbjct: 218 HYDSYSSYDELERRRSSNESYSRRSELPRRDYNRHD 253


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 73  SEQPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSF 201
           SEQ D +Q+K + ++KK    D      E    ++N   P  F
Sbjct: 278 SEQSDYRQIKIKKSKKKKSKSDRRKRLVELDAENENENDPSDF 320


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 172 WRRSVRTSRWYSREDTLSYVP 110
           W++ V    WY     LS+VP
Sbjct: 597 WQKKVERKLWYLTNSKLSFVP 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,388
Number of Sequences: 5004
Number of extensions: 31127
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)