Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L07
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397...    29   1.1  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    29   1.1  
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480     29   1.5  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    27   4.6  
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548...    27   6.1  
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283...    27   8.1  
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942           27   8.1  

>12_02_0912 -
           24238659-24238897,24239353-24239462,24239548-24239741,
           24239839-24239907,24240096-24240282,24240683-24240969,
           24241593-24241880
          Length = 457

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = -3

Query: 262 RLSAVYLCVHSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSREDTLSYVPPPLSIALNQ 83
           R   +Y  + S+ Y     C    V + S W RS   + W   E T    PP  + AL  
Sbjct: 197 RCKILYYSIFSWLYGLVGSCAHL-VMVNSSWTRSHIENIWRIPERTRRVYPPCDTSALQM 255

Query: 82  VVLNGS*RPPI 50
           + L  S  PPI
Sbjct: 256 LPLERSTTPPI 266


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +1

Query: 64   SCRSEQPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHK 243
            S  +++P +K  K++   K +   +C++V  EP    K  + P  F  +C     N  +K
Sbjct: 1634 SRENDEPKVKVTKSDTKEKDSL--ECSSV-IEPSSDRKLMQCPYDFEEICRKFVTNDSNK 1690

Query: 244  DTLRKVGDGECAGSDGI 294
            +T++++G     GS+G+
Sbjct: 1691 ETVKQIG---LNGSNGV 1704


>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
          Length = 623

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 175 YWRRSVRTSRWYSREDTLSYVP-PPLSIALNQVV 77
           YW+ +++TS WY++  T S+V      I LN+V+
Sbjct: 475 YWQPTMKTSDWYTKSCTYSWVSLNSKLINLNEVI 508


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 118 KKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKD 246
           ++AC  +C+N +    C   +  +P S G + + N  NC   D
Sbjct: 729 QQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFD 771


>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
            34355193-34355261,34355502-34355606,34355992-34356161,
            34356244-34356351,34356397-34356525,34356577-34356681,
            34357186-34357475,34357575-34357679,34358195-34358289,
            34358474-34358569,34358660-34358782,34359120-34359174,
            34359254-34359417,34359881-34359971,34360180-34360334,
            34360823-34361002,34361314-34361487,34361776-34361917,
            34362023-34362325,34362443-34362522
          Length = 1354

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 317  CSLN*ERRIPSEPAHSPSPTFR 252
            CS    +R PS PA  PSP F+
Sbjct: 1287 CSAEWRKRWPSPPARQPSPGFK 1308


>01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,
            2833799-2833868,2834021-2834108,2834325-2834580,
            2834758-2834883,2835217-2835425
          Length = 1410

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 37   IFAVLLVGVSCRSEQPDLKQLKAEAARKKACLHD 138
            + AVL +G+SC  +QP  + L A+A  +   + D
Sbjct: 1362 LVAVLRLGISCSKQQPRDRVLLADAVSEIHAIRD 1395


>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
          Length = 1020

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 37   IFAVLLVGVSCRSEQPDLKQLKAEAARKKACLHD 138
            + +VL +G+SC  +QP  + + AEA  +     D
Sbjct: 970  LVSVLRLGISCSKQQPRERMMLAEAVSEMHATRD 1003


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,124,170
Number of Sequences: 37544
Number of extensions: 194412
Number of successful extensions: 573
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)