Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L06
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 61 1e-10
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 50 2e-07
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 32 0.054
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 31 0.12
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.50
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 26 3.5
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ... 26 3.5
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 4.7
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 6.2
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.2
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 25 8.2
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 61.3 bits (142), Expect = 1e-10
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Frame = +3
Query: 171 KFPAGKVPAFESADGKVLLTESNAIAYYVANDD----LRGGDLATQARVLQWASWADSEL 338
KFP K+P F DG L+E+ AIA+Y+A+ + L G +A+VLQ+ S+ +SEL
Sbjct: 46 KFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSEL 104
Query: 339 LPASCAWVFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYS 518
A + P + +++Q + A+ S+T+LV R+TLADI
Sbjct: 105 PGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTC 164
Query: 519 TLLHAFQHVLDPTVRSKLVNVQR 587
L +VL + +K ++ R
Sbjct: 165 FLKFGATYVLTKSYLAKYTHIYR 187
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 50.4 bits (115), Expect = 2e-07
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 8/195 (4%)
Frame = +3
Query: 27 MAAGVLYTYPENFRAYKALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFES 206
M G LY++ N R L A+ V + + + + KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 207 ADGKVLLTESNAIAYYVA---NDDLRG-GDL--ATQARVLQWASWADSELL-PASCA-WV 362
ADG L + Y+ ++D G G + +A +L+W + + +++ P + WV
Sbjct: 58 ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117
Query: 363 FPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLHAFQH 542
+ G + + ++ + + RT+LV +R TLAD+ S L F
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNS 177
Query: 543 VLDPTVRSKLVNVQR 587
++D R +L ++ R
Sbjct: 178 IIDEKTRKELPHLTR 192
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 32.3 bits (70), Expect = 0.054
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Frame = -1
Query: 463 LKRCPSRSCSAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLSAHEA-HCNTRACVA 287
LK R+ + FF +S + + ++ +GKT + + +SSL+A + + + A
Sbjct: 28 LKLMSDRNANQELDFFFPKSKH-IASTLVDPFGKTCSTASPASSLAADMSMNMHIDESPA 86
Query: 286 RSPPRRSSFAT**A-----IALLSVSKTLPSALSNAGTLPAGNFFK----KFSVLLVSPN 134
PRR+ F + +A ++ LP + SN L FF+ K+S+ SP
Sbjct: 87 LPTPRRTLFRSLSCTVETPLANKTIVSPLPESPSN-DALTESYFFRQPASKYSITQDSPR 145
Query: 133 TKSGATFTFAPEYCAAIN 80
S ++F P+ A+N
Sbjct: 146 VSSTIAYSFKPKASIALN 163
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 31.1 bits (67), Expect = 0.12
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 54 PENFRAYKALIAAQYSGANVKVAPDFVFGETNKTENFLKKFPAGKVPAFESADGKVLLTE 233
P F++ KA + QY+ A +FG +K +NF K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 234 SN 239
SN
Sbjct: 612 SN 613
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.50
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +1
Query: 271 CEVETWQHRH---VCCNGPHGLTVNC 339
C+ TW +H VCC+GP+ L +C
Sbjct: 11 CQFLTWNSKHNYIVCCSGPYLLGFSC 36
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 350 LRMGLSIFRHHAVQQTECRACKE*FTGCTATSGWTSFEPHFPGHGEDYSCRYYRLQH 520
L G+S + + + FT +++ TSF F GHG D +Y R QH
Sbjct: 22 LHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCR-QH 77
>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 201 RMLVLYPPGTSSRSFQSCWSHRIQNR 124
++L ++PP TSSR + W+ ++ N+
Sbjct: 118 KILDVHPPQTSSRKAATTWACKVHNQ 143
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 244 IALLSVSKTLPSALSNAGTLPAGNF 170
+ L+S S+TLP S + + P NF
Sbjct: 2 VGLISTSETLPKQESKSSSAPVSNF 26
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 10 SKRIKPWLPGYFILIQKISALTRR*SPHN 96
S R K W+P IL QKIS++ S +N
Sbjct: 295 SSRFKEWIPKRDILSQKISSVLEVLSNNN 323
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 8.2
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 292 VARSPPRRSSFAT**AIALLSVSKTLPSALSNAGTLPAGNFFKKFSVLLVSPNTKSGATF 113
V + P R AT ++ +SVSK LP+ L N ++ S TK GA F
Sbjct: 67 VVSNSPHRQDAATTNTVSTVSVSKVLPALLLGVVLAALDN------TIVASTYTKIGAEF 120
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 143 LTEYKIGGYFHVRPGILCGDQRLVSAEIF 57
L EYK+ +++RPGI+ + L E+F
Sbjct: 76 LNEYKVA--YYLRPGIIPLNHNLAKQEVF 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,080
Number of Sequences: 5004
Number of extensions: 54626
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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