Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L05
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 1.4
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 27 1.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.4
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 3.2
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 3.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 5.6
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 26 5.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 7.4
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 7.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.4
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 312 PTGSSAASGRTSCRRVSPPTMSTRTKLNTTSTISGFVSYSS 434
PT SS+ +G S + S P + T T+S++ +Y+S
Sbjct: 650 PTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDSSSTYNS 690
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 315 TGSSAASGRTSCRRVSPPTMSTRTKL-NTTSTISGFVSYSSF 437
T SS+ T+ SP +S+ T + + +STIS VS SSF
Sbjct: 125 TSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSF 166
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 228 VTPSTASWTKYRTM*WTLTVGYIRLSLFPTGSSAASGRTSCRRVSPPTMSTRTKLNTTST 407
V+ T+S + Y T TLT ++ TG+ +A+ +S S ++ T ++T+ +
Sbjct: 471 VSSFTSSNSSYTT---TLTASNTTVTFTGTGTGSATATSSSPYYSNSSIIVPTTVSTSGS 527
Query: 408 ISGFVSYSS 434
+S F S S
Sbjct: 528 VSSFSSSPS 536
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 234 PSTASWTKYRTM*WTLTVGYIRLSLFPTGSSAASGRTSCRRVSPPTMSTRTKLNTTSTIS 413
PS+ S K T +T + SSA+S R+ +R S P ++ ++ + + S
Sbjct: 628 PSSISPNKATTNIFTSQASLSSQGVARETSSASSYRSYSQRASTPAVTAKSSFHYATPTS 687
Query: 414 GFVSYSS 434
G +++S
Sbjct: 688 GLSNFNS 694
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 371 DVDQDEVKYHKYYQWVCFV 427
D+DQD + H+ WVC++
Sbjct: 308 DLDQDMAELHRRIFWVCYI 326
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 5.6
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -3
Query: 340 LPDAADEP-VGNSESRIYPTVSVHHIVRYFVHDAVDGVTNILSRSNEKRKRDQDDHSSFV 164
L D+AD +SES I + S H +D + N + N+KRK+D+ D S +
Sbjct: 192 LTDSADNMNESDSESEIESSDSDHDDGENS-DSKLDNLRNYIVSLNQKRKKDEADAESVL 250
Query: 163 VQAEHIVVDAHSVE 122
++ ++ S++
Sbjct: 251 SSDDNDSIEEISIK 264
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 347 VQAGVASYDVDQDEVKYHKYYQWVCFVLF 433
VQ + Y VD ++ YH +YQ +C F
Sbjct: 488 VQHNIGLYVVDYGKLSYHLFYQ-ICLTEF 515
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 201 SENAIKMITVAL*CKRNTLLSMHTVSSLSSPFTEPN 94
S NA+ + T+ + +R+ +S + SSLSSP + N
Sbjct: 507 SSNALYLATLPMGYERSNSVSYCSDSSLSSPLPDDN 542
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 297 RLSLFPTGSSAASGRTSCRRVSPPTMSTRTKLNTTSTISGFVSYSSF 437
R+ P G S VSP +M++R LN T+ VS + F
Sbjct: 232 RIRRAPPGKLDLSNSNPTSPVSPSSMASRRGLNIPPTLKQAVSETPF 278
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -3
Query: 280 SVHHIVRYFVHDAVDGVTNILSRSNEKRKRDQDDHSSFVVQAEHIVVD 137
S ++ F+H + + + + S E D HS FV+ ++ +V D
Sbjct: 1488 SSQYLQSLFIH-YLSSLLSSMQHSYETNGHSSDTHSLFVINSQRVVGD 1534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,896
Number of Sequences: 5004
Number of extensions: 47233
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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