Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L05
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899...    29   3.3  
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720...    28   5.8  

>05_05_0292 +
           23889536-23889568,23889753-23889828,23889932-23889996,
           23890235-23890294,23890391-23890473,23890584-23890688,
           23890942-23891566,23892008-23892198,23892292-23892400,
           23892602-23892750,23892810-23892824,23893139-23893365,
           23893464-23893477
          Length = 583

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 315 TGSSAASGRTSCRRVSPPTMSTRTKLNTTSTISGFVSYSSFKRSCF 452
           +GSSA   ++S + +  P M T+ KL      S  ++  S+K +CF
Sbjct: 215 SGSSAIFQKSSLKSIRKPYMPTQRKLLKLCNCSVEMTRKSYKDACF 260


>08_02_0493 -
           17770723-17770758,17770772-17770996,17771051-17772033,
           17772196-17772720,17772801-17772990
          Length = 652

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 479 WERWPAFQNCLCPLXPSXFVP 541
           W+ WPA++ C     PS F+P
Sbjct: 67  WDCWPAWRECGAGCLPSSFLP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,236
Number of Sequences: 37544
Number of extensions: 310966
Number of successful extensions: 937
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)