Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L04
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    34   0.017
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    31   0.16 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   2.6  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   4.5  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   7.9  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   7.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 366 IIWFWFCLFRV-FGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGFCVSYRSR 190
           +++F+F LF + F  SF + FF   +   +FS +  + FLF F   +  F  F  S    
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHL 176

Query: 189 LSNQFLF 169
           LS   LF
Sbjct: 177 LSLAILF 183


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 425 SVGFGSADLGSGVFSSAMTLSSGFGFVSSGCLVSASAGA 309
           S GFGS   G G+F S+ T ++   F +SG  VS++A A
Sbjct: 137 STGFGSQGTGGGLFGSSTTPATTNAFGTSG-FVSSNANA 174


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -2

Query: 428  TSVGFGSADLGSGVFSSAMTLSSGFGFVSSGCLVSAS 318
            +S GF S+   +G  SS+ +L+S  G VSS  LVS+S
Sbjct: 3517 SSGGFSSSAFSTG--SSSFSLTSENGSVSSSSLVSSS 3551


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 64  ITSNPTSQDLNFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTTETQ 228
           IT   TS+D N    + +FC+ F     A+P  +  + +V  P    +T  +++Q
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNK-KNTSVSQSQ 398


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +1

Query: 367 KVIADEKTPEPKSAEPKPTDVPAXXXXXXXXXXXXXXXXVPSK--SKDTPAKVNEVPTEV 540
           KV+ D + P+PK +    T VP+                  SK  ++ +P  VN     V
Sbjct: 629 KVVVDNQQPQPKISTVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIV 688

Query: 541 SEKSASL 561
           ++   ++
Sbjct: 689 AKSPVTV 695


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 63  HNFKSDITGPKFHDEGLIILHGLCGCDYCE 152
           +N +  + G     E  + L  L GCDYCE
Sbjct: 208 YNIEKALNGLDMSVEQFVDLCILLGCDYCE 237


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 334 VWSQLLLVLFYLRAQVLFL*FLESDRVS 251
           +W  L+++L+YL   VLF+ F  S  VS
Sbjct: 239 IWQSLVMILYYL-LYVLFVFFSGSSGVS 265


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 279 FSFWSRIGFLFLFRNGMLCFSGFCVSYRSR 190
           FS W  + FL+L     L F G  + +RSR
Sbjct: 433 FSSWLLLIFLYLLFTVPLSFVGSLIGFRSR 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.126    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,312
Number of Sequences: 5004
Number of extensions: 32890
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)