Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L04
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953 31 0.87
05_03_0040 - 7646525-7647775 29 2.0
11_06_0368 + 22756988-22758205 29 3.5
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 28 4.6
05_03_0039 - 7621613-7622695 28 4.6
11_06_0610 - 25449085-25453284 28 6.1
09_02_0187 - 5533728-5534225 28 6.1
07_03_1102 - 23981362-23982219 27 8.1
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 27 8.1
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 27 8.1
>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
Length = 473
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 337 PEETKPKPDDKVIA-DEKTPEPKSAEPKPTD 426
P+E P P D V+ DE P PK P+P +
Sbjct: 213 PDEEAPNPKDTVLGQDEDAPVPKDVIPEPVE 243
>05_03_0040 - 7646525-7647775
Length = 416
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 343 ETKPKPDDKVIAD-EKTPEPKSAEPKPTDVP 432
E KP+P+ K + + E PEPK EPKP P
Sbjct: 73 EPKPEPEPKPVPEPEPKPEPK-PEPKPEPKP 102
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 343 ETKPKPDDKVIADEK-TPEPKSAEPKPTDVP 432
E KPKP+ K + K PEPK EPKP P
Sbjct: 229 EPKPKPEPKPYPEPKPKPEPK-PEPKPEPKP 258
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 334 HPE---ETKPKPDDKVIADEKTPEPKSAEPKPTDVP 432
HPE E KP+P+ K E PEPK EPKP P
Sbjct: 345 HPEPKPEPKPQPEPK---PEPKPEPK-PEPKPEPKP 376
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +1
Query: 334 HPEETKPKPDDKVIADEKTPEPKSAEPKPTDVP 432
HPE +PKP+ K E PEPK EPKP P
Sbjct: 197 HPEP-EPKPEPK---PEPKPEPK-PEPKPEPKP 224
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 343 ETKPKPDDKVIADEKTPEPKSAEPKPTDVP 432
E KPKP+ K E PEPK EPKP P
Sbjct: 241 EPKPKPEPK---PEPKPEPK-PEPKPEPKP 266
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 343 ETKPKPDDKVIADEKTPEPKSAEPKPTDVP 432
E KPKP+ K + K P+PK EPKP P
Sbjct: 157 EPKPKPEPKPHPEPK-PDPK-PEPKPHPEP 184
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 334 HPE---ETKPKPDDKVIAD-EKTPEPKSAEPKPTDVP 432
HPE + +PKP+ K + E PEPK EPKP P
Sbjct: 181 HPEPEPKPEPKPEPKPHPEPEPKPEPKP-EPKPEPKP 216
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 343 ETKPKPDDKV-IADEKTPEPKSAEPKPTDVP 432
E KPKP+ K E PEPK EPKP P
Sbjct: 275 EPKPKPEPKPHPKPEPKPEPK-PEPKPEPKP 304
>11_06_0368 + 22756988-22758205
Length = 405
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 352 PKPD-DKVIADEKTPEPKSAEPKPTDVP 432
P+PD DK + K P+PK PKP P
Sbjct: 4 PEPDKDKPLPKPKPPKPKPKPPKPEPEP 31
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 337 PEETKPKPDDKVIADEKTPEPKSAEPKPTDVP 432
PEE K ++K DEK PE E K + P
Sbjct: 106 PEEKKKSEEEKKKGDEKKPEEGKKEEKKEEKP 137
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 334 HPEETKPKPDDKVIA-DEKTPEPKSAEPKPTDVP 432
HPE KP+P K + E PEPK EPKP P
Sbjct: 177 HPEP-KPEPKPKPVPHPEPKPEPK-PEPKPHPEP 208
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 334 HPEETKPKPDDKVIADEKTPEPK---SAEPKPTDVP 432
H E KP+P+ K K PEPK EPKP P
Sbjct: 142 HKPEPKPEPEPKPYPKPK-PEPKPGPKPEPKPEPKP 176
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 334 HPE-ETKPKPD-DKVIADEKTPEPK-SAEPKPTDVP 432
HP+ E KP P+ + + E PEPK EPKP P
Sbjct: 219 HPKPEPKPHPEPEPKLKPEPKPEPKPEPEPKPEPKP 254
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 337 PEETKPKPDDKVIADEKTPEPKSAEPKP 420
PEE P P +EK+P P S E P
Sbjct: 763 PEEYTPSPPKSSPPEEKSPPPHSPEKSP 790
>09_02_0187 - 5533728-5534225
Length = 165
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 94 NFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTT 219
N KVL +C AA A+ VA + QEL + S D T
Sbjct: 59 NVLAKVLEYCKKHAAAAAAEDVAVKDQELKSFDASFIDVDNT 100
>07_03_1102 - 23981362-23982219
Length = 285
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 413 GSADLGSGVFSSAMTLSSGFGF--VSSGCLVSASAGA 309
G+AD +G S A F F +SSG LVSA AGA
Sbjct: 3 GAADAAAGGGSVAKDTGDDFEFCVLSSGGLVSAGAGA 39
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 337 PEETKPKPDDKVIADEKTPEPKSAEPKP 420
P E K KP+ K DEK P+PK PKP
Sbjct: 77 PPEEKKKPEPK--PDEKKPDPK---PKP 99
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 337 PEETKPKPDDKVIADEKTPEPKSAEPKPTDVPA 435
P + P P A+ P P + P PT PA
Sbjct: 20 PAPSNPAPPAAAAAETLAPAPPAPNPNPTPTPA 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.126 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,186
Number of Sequences: 37544
Number of extensions: 200396
Number of successful extensions: 574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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