Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L02
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 77 2e-15
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 27 1.5
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 27 2.0
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 2.0
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.5
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 4.6
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 6.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 8.1
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 8.1
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 76.6 bits (180), Expect = 2e-15
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +1
Query: 121 HTRALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWA 300
H RALID P S RQ IR + LT +K P A + +V K W + KWA S WA
Sbjct: 34 HKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWA 93
Query: 301 QKLANKEKRAQMTDYDRFK-LTSARVKRNRARTAVFKSLK 417
+KL K+ R+Q+ D+DRF + + +R + AV K+LK
Sbjct: 94 KKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133
Score = 34.7 bits (76), Expect = 0.010
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = +2
Query: 29 FARYVEPGRVALVSDGPLKGKLVGVFDIFELTHAHLLTVPAVVF 160
F RYVE GRV LV+ G GKL + DI + A L+ P F
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRA-LIDSPCSEF 46
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 358 LTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSAVKKLRTKKPNSKKTSKEVILLC 537
+TSA T+ K +K KAA G K+ ++A T + K + +V
Sbjct: 394 VTSAFEHNKDTATSKAKQMKGKAASLGSTASEKVGEAADYAAETASKVASKAASKVRETI 453
Query: 538 QKAVLNDW--DKIRELL 582
+ ++ W K++E L
Sbjct: 454 DETIIERWQDSKLKEFL 470
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 466 SAVKKLRTKKPNSKKTSKEVILLCQKAVLNDWDKIRELL 582
+A KL+ +K N+KK S + L +L+ W K E L
Sbjct: 437 TAFHKLQNEKLNTKKESSAPLSLVTDFLLHSWPKSAERL 475
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 361 TSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 471
T +NR T+ F + A AG+FG+S P +
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGS 196
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +1
Query: 313 NKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSAVKKLRTK 492
N++KR T + + A ++ A+ V K+ + AG+ K + S K +
Sbjct: 58 NRKKRHTKTYVEALESQLANMESTLAKIKVAPVEKIPSLLAGISFKDHLSASLPNKTSYE 117
Query: 493 KPNSKKTSKEVI 528
+ ++ TSK ++
Sbjct: 118 QADTNATSKSLV 129
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 189 ELVEANLLPRNTTAGTVNKCAC 124
E+ E+ LLP + T GTV AC
Sbjct: 951 EMKESGLLPTSVTYGTVINAAC 972
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 469 AVKKLRTKKPNSKKTSKEVILLCQKAVLND 558
A+KKLR +PNS + L +A++ND
Sbjct: 72 ALKKLRIDEPNSTVNQHHQLNLQYEALMND 101
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 247 KAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKA 426
+A + + E+ +++ +KLA +EKR + + K R+++ RA+ A K + ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRES 765
Query: 427 ARA 435
A A
Sbjct: 766 AHA 768
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 41 VEPGRVALVSDGPLKGKLVGVFDIFELTH 127
++ G+V++ GPL+ +V I EL+H
Sbjct: 790 LDKGKVSIKESGPLRASVVVDIPISELSH 818
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,921
Number of Sequences: 5004
Number of extensions: 41580
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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