Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L02
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 64 6e-11
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 59 2e-09
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 32 0.38
05_04_0180 - 18797372-18798529 29 2.0
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 28 4.7
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 28 6.2
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 28 6.2
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/101 (34%), Positives = 52/101 (51%)
Frame = +1
Query: 127 RALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQK 306
RAL+D P + R QI +L LT ++ + KA +A + KW S W +K
Sbjct: 35 RALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKK 92
Query: 307 LANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAA 429
L +++RA + D+DRFK+ A++KR A LK AA
Sbjct: 93 LIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTAA 133
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +2
Query: 23 MPFARYVEPGRVALVSDGPLKGKLVGVFDIFELTHAHLLTVPAVV 157
MPF R+VE GRVALV+ G G+LV + D+ + A L+ P +V
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRA-LVDAPDMV 44
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +1
Query: 127 RALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQK 306
RAL+D P + R QI +L LT ++ + KA +A + KW S W +K
Sbjct: 48 RALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKK 105
Query: 307 LANKEKRAQMTDYDRFKLTSARVK 378
L +++RA + D+DRFK+ A++K
Sbjct: 106 LIVQKRRASLNDFDRFKVMLAKIK 129
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 26 PFARYVEPGRVALVSDGPLKGKLVGVFDIFELTHAHLLTVPAVV 157
PF R+VE GRVALV+ G G+LV + D+ + A L+ P +V
Sbjct: 15 PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRA-LVDAPDMV 57
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +1
Query: 286 KSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPK 465
K ++ A A +R + A VK R R KSL+ KAA V G K+ +
Sbjct: 328 KKDGVKQSAKVANGASAETSERVDGSPAMVKSKRGRPPGLKSLEKKAAGKKVLGLKKVEE 387
Query: 466 SAVKKLRTKKPNSKKTSK 519
+ + K +SK SK
Sbjct: 388 TTDSTGKLSKQSSKDDSK 405
>05_04_0180 - 18797372-18798529
Length = 385
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 433 AGVFGKSKIPKSAVKKLRTKKPNSKKTSKEVILLCQKAVLNDWDKIREL 579
+ VF + P A KKP SK +KEVI K V ++K+ ++
Sbjct: 166 SSVFHRGGAPAPAAAAANAKKPPSKSLAKEVIKKYAKKVKPLYEKLSQI 214
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 434 ARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLAHF 276
A A+F K+ N ++A + D L ++ L S+ NFC+ LA+F
Sbjct: 124 AAASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYF 176
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 257 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 174
+H T+R+G + +FR V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 458 ILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICAL 324
IL L TP A FK+L + R L ++NL S++C +
Sbjct: 338 ILTLTDTP-NVAVAFKILMNVNMERITLAMEIATINLEVSIVCVM 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,438,277
Number of Sequences: 37544
Number of extensions: 275872
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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