Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_L02
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 77 1e-14
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 40 0.001
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 40 0.001
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 31 0.45
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 31 0.45
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 31 0.45
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 31 0.45
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 31 0.45
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 31 0.45
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 31 0.60
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 31 0.79
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 29 1.8
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 1.8
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical pr... 28 4.2
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 28 5.6
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 7.4
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/97 (41%), Positives = 57/97 (58%)
Frame = +1
Query: 127 RALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQK 306
R IDGP S V+R L L LTKF LK T+ V+ A+ A++ E + K+QWA+K
Sbjct: 35 RVQIDGPSSDVTRTVRNLKDLQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKK 94
Query: 307 LANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLK 417
+A + RA++TD++R+KL A+ RNR LK
Sbjct: 95 IAQRAIRAKLTDFERYKLMKAKQMRNRIVRVELAKLK 131
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 23 MPFARYVEPGRVALVSDGPLKGKLVGVFDIFE 118
M F R V+ GRV ++ G +GKL + ++ +
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVID 32
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/82 (36%), Positives = 39/82 (47%)
Frame = +1
Query: 262 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 441
A EK AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVA---- 182
Query: 442 FGKSKIPKSAVKKLRTKKPNSK 507
KS KSA KK KP K
Sbjct: 183 --KSPAKKSAPKKAAAAKPAKK 202
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/82 (36%), Positives = 39/82 (47%)
Frame = +1
Query: 262 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 441
A EK AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVA---- 182
Query: 442 FGKSKIPKSAVKKLRTKKPNSK 507
KS KSA KK KP K
Sbjct: 183 --KSPAKKSAPKKAAAAKPAKK 202
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 89 SKFNLFGSD 97
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 73 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 129
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 130 SKFNLFGSD 138
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 159 SKFNLFGSD 167
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.45
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 159 SKFNLFGSD 167
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 31.1 bits (67), Expect = 0.60
Identities = 29/117 (24%), Positives = 47/117 (40%)
Frame = +1
Query: 217 PFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRART 396
P+ AP K W D + K + +K KR M ++ K + K+ +++
Sbjct: 295 PYHAPGE--EKKWADER-----RKLRKIEKDLKMRKRETMKRAEKMKEAELKKKKESSKS 347
Query: 397 AVFKSLKVKAARAGVFGKSKIPKSAVKKLRTKKPNSKKTSKEVILLCQKAVLNDWDK 567
K K + K+ KSA K + ++ S+K KEV QK+ DK
Sbjct: 348 KEEDKNKKKEVKIKSAPKTSAKKSAKKSAKKEQKKSEKKVKEVPEKAQKSKKEKSDK 404
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 286 KSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAAR 432
++QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Frame = +1
Query: 217 PFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMT-DYDRFKLTSARVKRNRAR 393
PF A +VV+K + EK K + +K KEK + + D+ K R + + +
Sbjct: 351 PFYAEEKVVKKNKEKEREKEK-DKEKEKEKDKEKEKEKEKEKEKDKEKEREKRKSKEKIK 409
Query: 394 TAVFK--SLKVKAARAGVFGKSK-IPKSAVKKLRTKKPNSKKT 513
K SL+ R + +PK+ KK+RT P K T
Sbjct: 410 EKEKKMGSLEKTTERTSEAPSTNALPKAKPKKIRTLPPKQKHT 452
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 156 TTAGTVNKCACVSSKISN-TPTNFPFRGPSETRATRPGST*RAKGMTSSQAS 4
TT G A +SS T T PS T PG + + GMT+SQAS
Sbjct: 386 TTTGNPTTTAQLSSSSKTLTSTQTTQGSPSTVSQTTPGVSSASTGMTTSQAS 437
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 271 NEKWAKSQWAQKLANKEKRAQMTDYDRFK 357
N KW + A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 195 NKIP-PKIPFYSTHTCCQKSVDRR 263
N+ P P P+YST T C K+V RR
Sbjct: 53 NRSPSPHEPYYSTRTRCSKNVRRR 76
>Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical
protein F59B10.2 protein.
Length = 482
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 355 KLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSAVKKLRTKKPNSKKTSKEVI 528
K ++++ ++A + F+S K ++ A K PK K +TKKP+ K+ + I
Sbjct: 255 KTSTSKASSSKAYGSDFESEKSSSSSASTISKVT-PKKLDKPQKTKKPDKKRAKPDDI 311
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +1
Query: 274 EKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKS 453
EK KSQ +++ + +R + R + +KR+R R + +K ++ +
Sbjct: 79 EKSRKSQRSKRKKRESERRKKERSKRIARSKKSIKRDRERDSDSSRIKKSGSKRNL---E 135
Query: 454 KIPKSAVKKLRTKKPNSKKTSKE 522
K + K+ +K NS+++S+E
Sbjct: 136 KSNRDDSKRKISKDKNSRRSSQE 158
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +3
Query: 303 EISKQREESTDDRLRQIQADVGPC*EESCKNSSV*KLEGESGARWCLRQK*NPQKRS*KA 482
E K+REE +DR ++ + ++ S +SS ES ++K K+S K
Sbjct: 246 ENEKKREELKEDRRKEKKREMRAVRNVSEDDSSTSSESEESDFEQKKKKKVKKSKKSKKD 305
Query: 483 THEETQQQKNQQRSN 527
+E +++K +++N
Sbjct: 306 KKKEKKEKKKSKKAN 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,804
Number of Sequences: 27780
Number of extensions: 242370
Number of successful extensions: 776
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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