Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L01
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   1.1  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.5  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    27   2.0  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.6  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.0  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   6.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   7.9  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 329 HTETPSLFIFITKKTLFFRNILI 397
           H+  PSLF   T   LF RN+L+
Sbjct: 178 HSSQPSLFTTFTSLELFLRNVLV 200


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 172 MNRALCQIGSSRNSQMGNATNW 237
           + R LCQIGSS  S   N++N+
Sbjct: 121 LTRGLCQIGSSNYSTSANSSNF 142


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 52  THSYNYFP*TRTIYFSCDRLKVFGSLLSVYDKPCLLSVRTMNRALCQIGSSRN 210
           T +  Y+P + T ++    LK++GS  + ++ P ++S+   + A  QI   RN
Sbjct: 479 TRATTYYPSSVTSHYINSSLKIYGS--NEFETPEMISMAYEDGAYSQIEDMRN 529


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +2

Query: 299 KNIAINIFFYHTETPSLFIFITKKTLFFRNILILWSSHF 415
           KN A    F   +TPSLFI I K  +F+R IL +  S F
Sbjct: 268 KNKAWTYRFERMKTPSLFITIHK--IFWRQILGMGVSSF 304


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 242 VCTNNALLHSNTFRRTLQWKNIAINIFFYHTETPSLFIFIT 364
           +C   A   +N F  ++  + + + I  YH  T S+ IFI+
Sbjct: 499 LCIAAARSITNLFVESVDLQPLIMKIIMYHAFTSSIIIFIS 539


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 414 KCDDHRIRIFLKNNVFFVMKINKEGVS 334
           K   HRI +FL++NV+   + +K  +S
Sbjct: 307 KVGTHRIVVFLESNVYAAERFSKMNIS 333


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 305 IAINIFFYHTETPSLFIFITKKTLFFRNILILWSSH 412
           + I +FFY+ +  S   F+TKK   +    +  S+H
Sbjct: 260 LTIGLFFYYPDNTSTARFLTKKERLYTVDRVRRSNH 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,609
Number of Sequences: 5004
Number of extensions: 55674
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)