Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L01
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1151 - 31284094-31284204,31284375-31284434,31284518-312845...    34   0.071
07_03_0476 - 18547223-18548187,18548743-18549958                       30   1.5  
06_01_0164 + 1278781-1279005                                           29   3.5  
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900...    28   4.6  
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103...    28   4.6  
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025...    27   8.1  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    27   8.1  

>04_04_1151 -
           31284094-31284204,31284375-31284434,31284518-31284595,
           31284688-31284812,31284898-31285906,31286513-31286920,
           31287323-31287400,31287524-31287934
          Length = 759

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 566 SQNGYISCYCHTYSMVNLNICHLIQVIQLPNP*KCSPQWYL 444
           S +G ++C C  +    +  CH+++V +L N  +  PQ++L
Sbjct: 462 SSDGTVACTCKKFENAGILCCHILKVYELRNVKEIRPQYFL 502


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 560 NGYISCYCHTYSMVNLNICHLIQVIQLPNP*KCSPQWYL 444
           +G  +C C  +  V +  CH+++V+ L N  K  P+ Y+
Sbjct: 564 DGSATCSCRKFESVGIQCCHVLKVLDLKNI-KELPEQYI 601


>06_01_0164 + 1278781-1279005
          Length = 74

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 570 VITKWIYKLLLPYIFYGKSKHMSFNTGHSTTQSI 469
           V + WI  L L +  Y K++HM+++T H+    +
Sbjct: 18  VFSFWILYLQLRFDDYCKNEHMTYSTSHTANMQV 51


>10_05_0085 -
           9005539-9005922,9006207-9006463,9006707-9006883,
           9007349-9007490,9007814-9007904,9009024-9010942
          Length = 989

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 157 LSVRTMNRALCQIGSSRNSQMGNATNWICLYEQCITAQ*Y 276
           L+VRT   A+C+  +  NS+  +   W+ L+E  IT   Y
Sbjct: 799 LTVRTDCEAICRYYNQLNSKKSSTRRWV-LFEDIITGNGY 837


>07_03_0908 +
           22507565-22507810,22507925-22508872,22509314-22510337,
           22510425-22510477
          Length = 756

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 566 SQNGYISCYCHTYSMVNLNICHLIQVIQLPNP*KCSPQWYL 444
           S N  ++C C  +  V +   H+++V+   N     PQ++L
Sbjct: 586 SLNSMVNCSCKGFEFVGIPCRHMLKVLDTRNIKDLPPQYFL 626


>06_03_1286 -
           29000688-29001526,29001982-29002075,29002480-29002581,
           29002638-29002710,29003747-29003804,29003859-29003904,
           29003985-29004111,29004198-29004273,29004348-29004405,
           29004490-29004588,29004679-29004807,29005333-29005454,
           29005567-29005735,29005829-29005929,29006082-29006208,
           29006284-29006373,29006516-29006602,29006703-29006963,
           29007029-29007058
          Length = 895

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 346 FIYFHYKKNI-IFQKYSNSVVVTLFW 420
           FIYF YKK I IF +Y  +V   + W
Sbjct: 4   FIYFDYKKQINIFLRYKQAVQKRVKW 29


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 94  FSCDRLKVFGSLLSVYDKPCLLSVRTM 174
           ++ D+L  FG L  +Y+KP   SVR +
Sbjct: 555 YTADKLSSFGELALMYNKPLQASVRAV 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,663,512
Number of Sequences: 37544
Number of extensions: 299059
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)