Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L01
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-24|CAD31826.1|  135|Caenorhabditis elegans Hypothetical...    29   2.4  
AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    29   2.4  
Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    28   5.5  
AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z47358-6|CAA87436.1|  356|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AJ005864-1|CAA06741.1|  356|Caenorhabditis elegans Sqv-8 protein...    27   7.2  
Z81127-8|CAB03393.2|  495|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z77652-14|CAB01123.2|  495|Caenorhabditis elegans Hypothetical p...    27   9.5  
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    27   9.5  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AL132948-24|CAD31826.1|  135|Caenorhabditis elegans Hypothetical
           protein Y39B6A.32 protein.
          Length = 135

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 322 FLSYRDTFFIYFHYKKNIIFQKYS 393
           +L++R+ FF  FH+KK + F ++S
Sbjct: 93  YLNFRELFFKNFHFKKFVFFFEFS 116


>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 231 QLDLSVRTMHYCTVIRSGGLYNGKI*LSISFFI--IPRHLL-YLFSLQKK 371
           + + S   M+YC  I+SG + N ++  +IS  I  + R L  YLF L +K
Sbjct: 166 RFNFSEPVMNYCMAIKSGSVSNAEMISTISLVIQVVGRILFEYLFKLNEK 215


>Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical
           protein ZK858.5 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 223 NATNWICLYEQCITAQ*YVQADFTMEKYSYQYLFLSYRDTFFIYFHYKKNIIFQK-YSNS 399
           N   +IC+    ITA  Y+      +     Y++++   + FI     +  +F+  +  +
Sbjct: 128 NLIPFICVVALGITAGIYIIGQCGGQSRELSYIWMASFSSMFIMVRLAQTTVFRAIFLTA 187

Query: 400 VVVTLFWSRII*VNERYHCGLHF 468
           +V T+  +R   + +R H   HF
Sbjct: 188 IVSTVIGNRSARLKKRRHTWKHF 210


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 486 STTQSIKVQPAVVPLIDLYDP*PEKCDDHRIRIFLKN 376
           S T   K  P  V +IDL       CD H+  IF KN
Sbjct: 35  SKTSQFKEAPKSVKVIDLLPLYESDCDRHKKLIFCKN 71


>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 281 RRTLQWKN-IAINIFFYHTETPSLFIFITKKTLFFRNILIL 400
           +RT++WK  + + IFF+    P+ F F+      +RN+L++
Sbjct: 151 KRTVEWKEFVILTIFFHALIIPTFFTFLYFG--MYRNMLLM 189


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 311 INIFF--YHTETPSLFIFITKKTLFFRNILILWSSHFSGQGS 430
           IN+ F  Y    P L+   T++   FR++  +W+SHF+   S
Sbjct: 295 INLLFNVYSFTNPLLYFVFTRQ---FRDLRTMWNSHFASPAS 333


>Z47358-6|CAA87436.1|  356|Caenorhabditis elegans Hypothetical
           protein ZK1307.5 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 206 GIHKWGMQPTGFVCTNNALLHSNTFRRTLQWKNI 307
           GIH++ M+P   +CT   + H+ T +  L  ++I
Sbjct: 302 GIHRYNMEPLAEMCTKVYVWHTRTEKPKLSKESI 335


>AJ005864-1|CAA06741.1|  356|Caenorhabditis elegans Sqv-8 protein
           protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 206 GIHKWGMQPTGFVCTNNALLHSNTFRRTLQWKNI 307
           GIH++ M+P   +CT   + H+ T +  L  ++I
Sbjct: 302 GIHRYNMEPLAEMCTKVYVWHTRTEKPKLSKESI 335


>Z81127-8|CAB03393.2|  495|Caenorhabditis elegans Hypothetical
           protein C06B3.3 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 214 VNSCLNRFGITPGSLFLLIINMVCHKQITNYQI 116
           V + LN F    G +F L +  + H  ITNY++
Sbjct: 51  VTNMLNHFRKEYGDIFTLWLGPIPHVNITNYEL 83


>Z77652-14|CAB01123.2|  495|Caenorhabditis elegans Hypothetical
           protein C06B3.3 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 214 VNSCLNRFGITPGSLFLLIINMVCHKQITNYQI 116
           V + LN F    G +F L +  + H  ITNY++
Sbjct: 51  VTNMLNHFRKEYGDIFTLWLGPIPHVNITNYEL 83


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 290 LQWKNIAINIFFYHTETPSLFIFITKKTLFFRNILILWSSHFSGQGSYKSMRGTTAGCTF 469
           L  K IA+N    H+ T  L +F+ +  +F  +     S+HF    +++  R  T+G  +
Sbjct: 123 LPGKIIAVNAE-KHSNTELLLVFLLETGIFHYSFCAHTSTHFQCIQAFRCNRPITSGLLW 181

Query: 470 MD 475
            D
Sbjct: 182 RD 183


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 290 LQWKNIAINIFFYHTETPSLFIFITKKTLFFRNILILWSSHFSGQGSYKSMRGTTAGCTF 469
           L  K IA+N    H+ T  L +F+ +  +F  +     S+HF    +++  R  T+G  +
Sbjct: 123 LPGKIIAVNAE-KHSNTELLLVFLLETGIFHYSFCAHTSTHFQCIQAFRCNRPITSGLLW 181

Query: 470 MD 475
            D
Sbjct: 182 RD 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,087
Number of Sequences: 27780
Number of extensions: 312195
Number of successful extensions: 782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)