Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_L01
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.41 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.41 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.54 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   0.94 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.7  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 566 SQNGYISCYCHTYSMVNLNICHLIQVIQLPNP*KC 462
           + N Y   YC+ Y  +  NI + I+ I +P P  C
Sbjct: 92  NNNNYKKLYCNNYKKLYYNI-NYIEQIPIPVPIYC 125


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 566 SQNGYISCYCHTYSMVNLNICHLIQVIQLPNP*KC 462
           + N Y   YC+ Y  +  NI + I+ I +P P  C
Sbjct: 92  NNNNYKKLYCNNYKKLYYNI-NYIEQIPIPVPIYC 125


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 566 SQNGYISCYCHTYSMVNLNICHLIQVIQLPNP*KC 462
           + N Y   YC+ Y  +  NI + I+ I +P P  C
Sbjct: 92  NNNNYKKLYCNNYRKLYYNI-NYIEQIPIPVPIYC 125


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 322 FLSYRDTFFIYFHYKKNIIFQKYSNSVVVTLFWSRII*VNERYHC 456
           F+SY   FFIY H   +  F    N  VV++F++ +I +   + C
Sbjct: 128 FISYGTLFFIYVH--PSATFSLDLNK-VVSVFYTAVIPMLNPFIC 169


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 326 YHTETP-SLFIFITKKTLFFRNILIL 400
           + TET  + +I I +KTLF+   LIL
Sbjct: 217 FPTETDITFYIIIRRKTLFYTVNLIL 242


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 251 NNALLHSNTFRRTLQWKNIAINI 319
           NN   + N + + L +KN  INI
Sbjct: 327 NNYKYNYNNYNKKLYYKNYIINI 349


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 548 SCYCHTYSMVNLNICHLIQVIQLPNP*KCSPQWYLSL 438
           SC+   Y +   + C ++Q  + P+     PQ YL +
Sbjct: 42  SCHKCKYGIAMSSACGIVQCAKGPDELCGGPQNYLGI 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,899
Number of Sequences: 438
Number of extensions: 4097
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)